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D. rerio Gene: cdh11 - ENSDARG00000021442 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000021442
Namecdh11
Descriptioncadherin 11, type 2, OB-cadherin (osteoblast) [Source:ZFIN;Acc:ZDB-GENE-980526-170]
OrganismDanio rerio (zebrafish)
Synonym(s)cdhvn, ventral neural cadherin, vnc
Orthologs(s)20 orthologs
Paralog(s)9 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
1.45e3
  • 1.45e3
  • 1.64e3
  • 1.81e3
  • 1.87e3
  • 2.67e3
  • 2.82e3
  • 3.00e3
  • 3.25e3
  • 3.75e3
  • 7.23e3
  • 1.02e4
  • 1.20e4
  • 1.24e4
95.16
  • 95.16
  • 94.53
  • 93.94
  • 93.74
  • 91.08
  • 90.57
  • 89.96
  • 89.12
  • 87.43
  • 75.81
  • 65.95
  • 59.94
  • 58.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
1.63e3
  • 1.63e3
  • 1.74e3
  • 4.38e3
  • 4.40e3
  • 4.54e3
  • 5.25e3
  • 5.92e3
  • 6.04e3
  • 6.40e3
  • 6.94e3
94.54
  • 94.54
  • 94.19
  • 85.33
  • 85.28
  • 84.81
  • 82.41
  • 80.16
  • 79.77
  • 78.58
  • 76.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.16e3
  • 2.16e3
  • 3.12e3
  • 3.93e3
92.76
  • 92.76
  • 89.56
  • 86.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.41e3
  • 2.41e3
91.93
  • 91.93
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.69e3
  • 3.69e3
  • 4.17e3
87.66
  • 87.66
  • 86.04
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.93e3
  • 3.93e3
  • 5.83e3
86.84
  • 86.84
  • 80.49
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.00e3
  • 4.00e3
86.60
  • 86.60
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.17e3
  • 4.17e3
86.04
  • 86.04
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.25e3
  • 4.25e3
85.76
  • 85.76
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.94e3
  • 4.94e3
  • 5.88e3
83.46
  • 83.46
  • 80.31
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.54e3
  • 5.54e3
81.44
  • 81.44
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.97e3
  • 5.97e3
  • 6.12e3
  • 7.20e3
  • 1.19e4
80.01
  • 80.01
  • 79.50
  • 75.89
  • 60.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
6.51e3
  • 6.51e3
  • 1.25e4
  • 1.32e4
  • 1.45e4
78.22
  • 78.22
  • 58.10
  • 55.88
  • 51.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.74e3
  • 6.74e3
  • 1.59e4
77.45
  • 77.45
  • 46.82
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.86e3
  • 7.86e3
73.67
  • 73.67
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.19e3
  • 8.19e3
72.59
  • 72.59
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.61e3
  • 8.61e3
71.17
  • 71.17
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.86e3
  • 8.86e3
70.33
  • 70.33
AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 1.28e4
66.67
  • 66.67
  • 57.12
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.76
  • 63.76
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.77
  • 62.77
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.59
  • 61.59
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.74
  • 59.74
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.44e4
  • 1.44e4
  • 1.79e4
51.89
  • 51.89
  • 40.14
AEIR
  • AEIR
  • AEIR
UBERON:0004741cleithrum
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.31
  • 49.31
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.77
  • 45.77
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.66e4
  • 1.66e4
44.29
  • 44.29
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.74
  • 35.74
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000021442.

Cross-references

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