D. rerio Gene: sec61a1 - ENSDARG00000021669 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000021669
Namesec61a1
DescriptionSec61 translocon alpha 1 subunit [Source:ZFIN;Acc:ZDB-GENE-020418-2]
OrganismDanio rerio (zebrafish)
Synonym(s)chunp6898, fb62c11, q7zu31, sec61a, sec61aa, sec61al1, wu:fb62c11
Orthologs(s)26 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
257
  • 257
  • 281
99.14
  • 99.14
  • 99.06
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
287
  • 287
  • 687
99.04
  • 99.04
  • 97.70
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
346
  • 346
  • 386
  • 434
  • 579
  • 975
98.84
  • 98.84
  • 98.71
  • 98.55
  • 98.06
  • 96.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
401
  • 401
  • 440
98.66
  • 98.66
  • 98.53
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
415
  • 415
98.61
  • 98.61
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
430
  • 430
  • 1.43e4
98.56
  • 98.56
  • 52.10
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
472
  • 472
  • 1.03e4
98.42
  • 98.42
  • 65.61
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
488
  • 488
98.37
  • 98.37
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
488
  • 488
98.37
  • 98.37
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
599
  • 599
98.00
  • 98.00
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000028Segmentation:26+ somites
626
  • 626
  • 1.12e3
  • 1.12e4
  • 1.49e4
97.91
  • 97.91
  • 96.25
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
637
  • 637
97.87
  • 97.87
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
682
  • 682
97.72
  • 97.72
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
758
  • 758
97.47
  • 97.47
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
764
  • 764
97.45
  • 97.45
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
789
  • 789
97.36
  • 97.36
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
804
  • 804
97.31
  • 97.31
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
843
  • 843
97.18
  • 97.18
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
857
  • 857
97.13
  • 97.13
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
890
  • 890
  • 1.34e3
  • 1.21e4
97.02
  • 97.02
  • 95.52
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
916
  • 916
96.94
  • 96.94
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000049segmentation
1.54e3
  • 1.54e3
  • 4.98e3
  • 6.22e3
  • 6.79e3
  • 6.97e3
  • 7.47e3
  • 7.91e3
  • 7.97e3
  • 8.30e3
  • 8.79e3
  • 8.96e3
  • 1.05e4
  • 1.23e4
  • 1.25e4
  • 1.29e4
  • 1.30e4
  • 1.45e4
94.85
  • 94.85
  • 83.33
  • 79.16
  • 77.27
  • 76.66
  • 74.99
  • 73.52
  • 73.32
  • 72.21
  • 70.57
  • 69.99
  • 64.75
  • 58.76
  • 58.30
  • 56.79
  • 56.38
  • 51.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.21e3
  • 2.21e3
92.61
  • 92.61
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.67e3
  • 2.67e3
91.05
  • 91.05
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
90.69
  • 90.69
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.63e3
  • 3.63e3
87.86
  • 87.86
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000019Gastrula:Shield
4.27e3
  • 4.27e3
  • 4.27e3
  • 4.27e3
  • 7.47e3
85.71
  • 85.71
  • 85.71
  • 85.71
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
  • 6.97e3
  • 7.97e3
78.56
  • 78.56
  • 76.66
  • 73.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
  • 8.96e3
  • 1.33e4
  • 1.33e4
75.00
  • 75.00
  • 69.98
  • 55.53
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
  • 8.04e3
  • 1.28e4
  • 1.38e4
74.99
  • 74.99
  • 73.07
  • 57.13
  • 53.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000026Segmentation:14-19 somites
7.97e3
  • 7.97e3
73.32
  • 73.32
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
9.56e3
  • 9.56e3
  • 1.09e4
67.98
  • 67.98
  • 63.61
AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000037Larval:Day 5
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0002100trunk
  • ZFS:0000028Segmentation:26+ somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001708jaw skeleton
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000017exocrine pancreas
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0004749blastodisc
  • ZFS:0000014Blastula:Sphere
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.94
  • 49.94
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000021669.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000021669.

Cross-references

EnsemblENSDARG00000021669 (sec61a1)
ZFINZDB-GENE-020418-2 (sec61a1)
EMBLAY029527, BC044351, BC066715
Uniprot/SWISSPROTQ90ZM2, S61A1_DANRE

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