D. rerio Gene: sec61a1 - ENSDARG00000021669 - Danio rerio (zebrafish)

Gene Information

Ensembl IDENSDARG00000021669
Namesec61a1
DescriptionSec61 translocon alpha 1 subunit [Source:ZFIN;Acc:ZDB-GENE-020418-2]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
189
  • 189
  • 1.02e4
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
346
  • 346
  • 384
  • 434
  • 579
  • 975
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
415
  • 415
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
429
  • 429
  • 1.42e4
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
488
  • 488
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
582
  • 582
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
588
  • 588
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000028Segmentation:26+ somites
626
  • 626
  • 1.12e3
  • 1.11e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
682
  • 682
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
758
  • 758
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
789
  • 789
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
830
  • 830
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
843
  • 843
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
857
  • 857
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.23e3
  • 1.23e3
  • 1.20e4
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000049segmentation
1.52e3
  • 1.52e3
  • 4.93e3
  • 6.17e3
  • 6.73e3
  • 6.91e3
  • 7.40e3
  • 7.84e3
  • 7.89e3
  • 8.22e3
  • 8.71e3
  • 8.88e3
  • 1.04e4
  • 1.22e4
  • 1.23e4
  • 1.28e4
  • 1.29e4
  • 1.43e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.15e3
  • 2.15e3
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.63e3
  • 3.63e3
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000019Gastrula:Shield
4.23e3
  • 4.23e3
  • 4.23e3
  • 4.23e3
  • 7.40e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
6.34e3
  • 6.34e3
  • 6.91e3
  • 7.89e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
7.40e3
  • 7.40e3
  • 8.88e3
  • 1.32e4
  • 1.32e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
7.40e3
  • 7.40e3
  • 7.97e3
  • 1.27e4
  • 1.37e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000026Segmentation:14-19 somites
7.89e3
  • 7.89e3
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
9.48e3
  • 9.48e3
  • 1.08e4
AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000035Larval:Protruding-mouth
9.86e3
  • 9.86e3
AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000037Larval:Day 5
9.87e3
  • 9.87e3
AEIR
  • AEIR
UBERON:0002100trunk
  • ZFS:0000028Segmentation:26+ somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0001708jaw skeleton
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000017exocrine pancreas
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0004749blastodisc
  • ZFS:0000014Blastula:Sphere
1.48e4
  • 1.48e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO