D. rerio Gene: calm1a - ENSDARG00000021811 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000021811
Namecalm1a
Descriptioncalmodulin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8308]
OrganismDanio rerio (zebrafish)
Synonym(s)calm1b, calm2g, calmx2, cam3 gamma, cambeta, camgamma, q4v949, sb:cb617, wu:fb08d09, wu:fb69c08, wu:fi05b08, wu:fj34a08, zgc:63926, zgc:86728
Orthologs(s)55 orthologs
Paralog(s)49 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
92.7
  • 92.7
  • 2.31e3
  • 1.25e4
99.69
  • 99.69
  • 92.26
  • 58.29
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
142
  • 142
  • 988
  • 2.13e3
  • 5.13e3
  • 6.72e3
  • 9.10e3
99.53
  • 99.53
  • 96.70
  • 92.87
  • 82.81
  • 77.49
  • 69.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
277
  • 277
  • 296
99.08
  • 99.08
  • 99.01
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
311
  • 311
98.96
  • 98.96
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
338
  • 338
  • 655
  • 857
  • 1.08e3
  • 1.28e3
  • 2.91e3
  • 3.62e3
  • 5.07e3
  • 5.75e3
  • 6.21e3
98.87
  • 98.87
  • 97.81
  • 97.13
  • 96.38
  • 95.71
  • 90.26
  • 87.89
  • 83.03
  • 80.74
  • 79.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
348
  • 348
98.84
  • 98.84
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
353
  • 353
  • 366
  • 2.15e3
  • 2.28e3
  • 3.36e3
98.82
  • 98.82
  • 98.78
  • 92.81
  • 92.35
  • 88.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
353
  • 353
98.82
  • 98.82
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
362
  • 362
98.79
  • 98.79
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
379
  • 379
  • 1.46e3
  • 2.08e3
  • 2.20e3
  • 2.21e3
  • 2.37e3
98.73
  • 98.73
  • 95.13
  • 93.04
  • 92.64
  • 92.62
  • 92.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000109gastrula stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
461
  • 461
  • 691
  • 814
  • 1.10e3
  • 1.20e3
  • 1.33e3
  • 1.49e3
  • 1.49e3
  • 1.58e3
  • 1.91e3
  • 2.40e3
  • 3.27e3
  • 3.38e3
  • 3.90e3
  • 1.19e4
  • 1.25e4
  • 1.41e4
  • 1.45e4
  • 1.45e4
98.46
  • 98.46
  • 97.69
  • 97.28
  • 96.32
  • 95.98
  • 95.56
  • 95.02
  • 95.01
  • 94.72
  • 93.61
  • 91.96
  • 89.07
  • 88.69
  • 86.93
  • 60.00
  • 58.30
  • 52.86
  • 51.56
  • 51.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
523
  • 523
  • 896
  • 1.05e3
98.25
  • 98.25
  • 97.00
  • 96.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
529
  • 529
98.23
  • 98.23
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
549
  • 549
  • 1.09e3
  • 1.09e4
98.16
  • 98.16
  • 96.35
  • 63.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
577
  • 577
98.07
  • 98.07
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
617
  • 617
97.94
  • 97.94
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
687
  • 687
97.70
  • 97.70
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
769
  • 769
97.43
  • 97.43
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
879
  • 879
97.06
  • 97.06
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.02e3
  • 1.02e3
96.60
  • 96.60
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.15e3
  • 1.15e3
96.15
  • 96.15
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.27e3
  • 1.27e3
95.74
  • 95.74
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.33e3
  • 1.33e3
95.57
  • 95.57
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.54e3
  • 1.54e3
94.84
  • 94.84
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.57e3
  • 1.57e3
94.74
  • 94.74
AEIR
  • AEIR
CL:0000530primary neuron
  • ZFS:0000026Segmentation:14-19 somites
1.87e3
  • 1.87e3
93.75
  • 93.75
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.00e3
  • 2.00e3
93.29
  • 93.29
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.03e3
  • 2.03e3
93.20
  • 93.20
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.10e3
  • 2.10e3
92.97
  • 92.97
AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
2.13e3
  • 2.13e3
  • 2.49e3
92.86
  • 92.86
  • 91.67
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.33e3
  • 2.33e3
92.19
  • 92.19
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.19e3
  • 3.19e3
89.31
  • 89.31
AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000026Segmentation:14-19 somites
3.20e3
  • 3.20e3
89.28
  • 89.28
AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
3.20e3
  • 3.20e3
  • 3.98e3
  • 7.08e3
89.28
  • 89.28
  • 86.66
  • 76.30
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
  • 4.32e3
89.09
  • 89.09
  • 85.55
AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
3.98e3
  • 3.98e3
  • 4.98e3
  • 1.49e4
86.66
  • 86.66
  • 83.33
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.15e3
  • 4.15e3
  • 7.08e3
  • 7.15e3
  • 7.47e3
  • 9.10e3
  • 9.51e3
86.11
  • 86.11
  • 76.30
  • 76.07
  • 74.98
  • 69.55
  • 68.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
4.39e3
  • 4.39e3
85.29
  • 85.29
AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
4.48e3
  • 4.48e3
  • 4.98e3
  • 5.43e3
85.00
  • 85.00
  • 83.33
  • 81.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.67e3
  • 4.67e3
  • 4.98e3
  • 4.98e3
  • 8.54e3
  • 8.54e3
84.37
  • 84.37
  • 83.33
  • 83.33
  • 71.42
  • 71.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.72e3
  • 4.72e3
  • 5.50e3
  • 5.81e3
  • 6.85e3
  • 7.47e3
  • 7.47e3
  • 9.44e3
  • 9.44e3
84.20
  • 84.20
  • 81.57
  • 80.55
  • 77.07
  • 74.99
  • 74.99
  • 68.40
  • 68.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
4.72e3
  • 4.72e3
84.20
  • 84.20
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 5.60e3
  • 7.12e3
83.33
  • 83.33
  • 81.24
  • 76.18
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
5.23e3
  • 5.23e3
  • 6.50e3
  • 6.72e3
  • 6.72e3
82.49
  • 82.49
  • 78.25
  • 77.49
  • 77.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
5.60e3
  • 5.60e3
  • 5.81e3
  • 6.97e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
81.24
  • 81.24
  • 80.55
  • 76.66
  • 74.99
  • 74.99
  • 74.99
  • 73.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
5.60e3
  • 5.60e3
  • 6.40e3
  • 7.03e3
  • 7.47e3
81.24
  • 81.24
  • 78.56
  • 76.46
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.69e3
  • 5.69e3
  • 5.98e3
  • 6.72e3
  • 7.47e3
  • 7.86e3
  • 8.96e3
  • 9.10e3
80.94
  • 80.94
  • 79.99
  • 77.49
  • 74.98
  • 73.67
  • 69.98
  • 69.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
6.64e3
  • 6.64e3
  • 7.03e3
  • 7.03e3
  • 9.34e3
  • 9.67e3
77.77
  • 77.77
  • 76.46
  • 76.46
  • 68.74
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
6.64e3
  • 6.64e3
  • 6.64e3
  • 6.72e3
77.77
  • 77.77
  • 77.77
  • 77.49
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
6.72e3
  • 6.72e3
  • 6.72e3
  • 7.47e3
  • 8.54e3
  • 8.96e3
  • 9.34e3
  • 9.34e3
77.49
  • 77.49
  • 77.49
  • 74.98
  • 71.42
  • 69.99
  • 68.74
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
6.72e3
  • 6.72e3
  • 6.72e3
  • 7.03e3
  • 7.08e3
  • 7.47e3
  • 8.83e3
  • 9.51e3
77.49
  • 77.49
  • 77.49
  • 76.46
  • 76.30
  • 74.98
  • 70.44
  • 68.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.03e3
  • 7.03e3
  • 7.03e3
  • 7.03e3
76.46
  • 76.46
  • 76.46
  • 76.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
7.34e3
  • 7.34e3
  • 7.73e3
  • 1.02e4
  • 1.06e4
75.43
  • 75.43
  • 74.12
  • 65.89
  • 64.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.77e3
  • 7.77e3
73.97
  • 73.97
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.65e3
  • 8.65e3
  • 8.96e3
71.04
  • 71.04
  • 69.98
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.79e3
  • 8.79e3
  • 8.79e3
70.57
  • 70.57
  • 70.57
AEIR
  • AEIR
  • AEIR
UBERON:2007025midbrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
66.66
  • 66.66
  • 66.66
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
  • 1.34e4
57.14
  • 57.14
  • 55.21
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species44 genesCompare expression
Bilateria25 species55 genesCompare expression

Orthology information comes from OMA : ENSDARG00000021811.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi5 genesCompare expression
Eukaryota49 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000021811.

Cross-references

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