D. rerio Gene: smad9 - ENSDARG00000021938 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000021938
Namesmad9
DescriptionSMAD family member 9 [Source:ZFIN;Acc:ZDB-GENE-031014-1]
OrganismDanio rerio (zebrafish)
Synonym(s)madh9, sma8, smad8, zgc:103407

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
3.29e3
  • 3.29e3
  • 9.87e3
  • 1.09e4
88.87254
  • 88.87254
  • 66.65314
  • 63.13761
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
4.35e3
  • 4.35e3
  • 6.06e3
  • 6.73e3
  • 7.40e3
  • 8.88e3
  • 1.39e4
  • 1.48e4
85.28903
  • 85.28903
  • 79.53431
  • 77.26767
  • 74.98902
  • 69.98817
  • 52.86343
  • 49.94930
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.74e3
  • 4.74e3
83.99946
  • 83.99946
AEIR
  • AEIR
UBERON:0000931proctodeum
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
5.55e3
  • 5.55e3
  • 5.55e3
  • 5.92e3
81.24831
  • 81.24831
  • 81.24831
  • 79.99662
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
6.17e3
  • 6.17e3
  • 7.84e3
  • 7.84e3
  • 7.84e3
79.16161
  • 79.16161
  • 73.51758
  • 73.51758
  • 73.51758
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
6.48e3
  • 6.48e3
  • 6.91e3
  • 6.91e3
78.11654
  • 78.11654
  • 76.65821
  • 76.65821
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
6.83e3
  • 6.83e3
  • 8.46e3
  • 8.71e3
  • 8.88e3
  • 9.05e3
  • 9.05e3
76.91633
  • 76.91633
  • 71.41166
  • 70.57472
  • 69.98310
  • 69.42923
  • 69.42923
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.31e3
  • 7.31e3
  • 1.16e4
75.28265
  • 75.28265
  • 60.65292
AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
7.40e3
  • 7.40e3
  • 7.40e3
  • 8.22e3
  • 9.11e3
  • 1.02e4
  • 1.02e4
  • 1.04e4
74.99153
  • 74.99153
  • 74.99153
  • 72.20871
  • 69.22062
  • 65.60979
  • 65.60979
  • 64.68900
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.40e3
  • 7.40e3
  • 7.89e3
  • 7.89e3
  • 8.63e3
  • 9.51e3
  • 9.51e3
  • 9.87e3
  • 1.06e4
74.98984
  • 74.98984
  • 73.32320
  • 73.32320
  • 70.82487
  • 67.84530
  • 67.84530
  • 66.65652
  • 64.27218
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
7.54e3
  • 7.54e3
  • 7.87e3
  • 8.56e3
  • 1.02e4
  • 1.17e4
74.52216
  • 74.52216
  • 73.41233
  • 71.08036
  • 65.59580
  • 60.42888
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.89e3
  • 7.89e3
  • 8.33e3
  • 9.16e3
  • 9.35e3
  • 9.51e3
  • 9.87e3
  • 1.02e4
  • 1.07e4
73.32320
  • 73.32320
  • 71.86318
  • 69.02902
  • 68.40414
  • 67.84530
  • 66.65314
  • 65.60979
  • 63.87031
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
7.89e3
  • 7.89e3
  • 7.97e3
  • 9.05e3
73.32320
  • 73.32320
  • 73.06846
  • 69.42923
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.14e3
  • 8.14e3
  • 8.14e3
  • 8.46e3
  • 1.01e4
  • 1.08e4
72.48478
  • 72.48478
  • 72.48478
  • 71.40490
  • 65.88711
  • 63.61269
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
8.14e3
  • 8.14e3
  • 8.14e3
  • 8.64e3
  • 1.07e4
72.48478
  • 72.48478
  • 72.48478
  • 70.81304
  • 63.76101
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.22e3
  • 8.22e3
  • 1.03e4
  • 1.08e4
72.20871
  • 72.20871
  • 65.19372
  • 63.61269
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
8.46e3
  • 8.46e3
  • 8.88e3
71.41842
  • 71.41842
  • 69.98817
AEIR
  • AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.46e3
  • 8.46e3
  • 9.05e3
  • 9.05e3
71.41166
  • 71.41166
  • 69.42923
  • 69.42923
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000162cloaca
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.63e3
  • 8.63e3
  • 8.63e3
70.82487
  • 70.82487
  • 70.82487
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.64e3
  • 8.64e3
70.79579
  • 70.79579
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.88e3
  • 8.88e3
  • 8.88e3
  • 9.42e3
  • 1.02e4
  • 1.02e4
69.98310
  • 69.98310
  • 69.98310
  • 68.16153
  • 65.60979
  • 65.60979
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.05e3
  • 9.05e3
  • 9.58e3
69.42923
  • 69.42923
  • 67.63186
AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
9.05e3
  • 9.05e3
  • 9.05e3
  • 9.87e3
69.42923
  • 69.42923
  • 69.42923
  • 66.64976
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
9.62e3
  • 9.62e3
67.48142
  • 67.48142
AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
9.87e3
  • 9.87e3
  • 1.04e4
66.65652
  • 66.65652
  • 64.99153
AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
9.87e3
  • 9.87e3
  • 1.01e4
66.64976
  • 66.64976
  • 65.77088
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
9.87e3
  • 9.87e3
  • 1.01e4
  • 1.03e4
  • 1.04e4
66.64638
  • 66.64638
  • 65.88711
  • 65.19372
  • 64.97970
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
65.91013
  • 65.91013
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.38962
  • 65.38962
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.07e4
  • 1.07e4
  • 1.11e4
63.87031
  • 63.87031
  • 62.47802
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.13445
  • 62.13445
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
59.75242
  • 59.75242
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000029Pharyngula:Prim-5
1.23e4
  • 1.23e4
58.32826
  • 58.32826
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
57.67664
  • 57.67664
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.03884
  • 54.03884
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
49.59863
  • 49.59863
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
47.89853
  • 47.89853
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
45.93818
  • 45.93818
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
41.96219
  • 41.96219
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLCT573139
EnsemblENSDARG00000021938 (smad9)
Uniprot/SPTREMBLF1QXZ9, F1QXZ9_DANRE
ZFINZDB-GENE-031014-1 (smad9)

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