D. rerio Gene: ddx23 - ENSDARG00000021945 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000021945
Nameddx23
DescriptionDEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fi39b12, zgc:63742
Orthologs(s)24 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.53e3
  • 1.53e3
  • 3.38e3
  • 4.42e3
  • 4.80e3
  • 7.26e3
  • 7.64e3
94.87
  • 94.87
  • 88.70
  • 85.22
  • 83.94
  • 75.70
  • 74.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.76e3
  • 1.76e3
  • 2.82e3
  • 8.74e3
  • 1.06e4
  • 1.08e4
94.12
  • 94.12
  • 90.55
  • 70.74
  • 64.40
  • 63.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
2.57e3
  • 2.57e3
  • 2.64e3
  • 4.82e3
  • 4.85e3
  • 5.33e3
  • 6.03e3
  • 7.06e3
  • 8.31e3
  • 1.19e4
  • 1.23e4
91.40
  • 91.40
  • 91.17
  • 83.85
  • 83.77
  • 82.15
  • 79.81
  • 76.36
  • 72.16
  • 60.26
  • 58.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.96e3
  • 2.96e3
90.10
  • 90.10
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.21e3
  • 3.21e3
  • 7.29e3
89.24
  • 89.24
  • 75.60
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.34e3
  • 3.34e3
88.82
  • 88.82
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
3.60e3
  • 3.60e3
  • 3.69e3
  • 3.79e3
  • 4.02e3
  • 4.59e3
  • 4.68e3
  • 6.14e3
  • 6.64e3
  • 7.06e3
  • 7.23e3
  • 7.64e3
  • 7.65e3
  • 8.29e3
  • 8.65e3
  • 1.44e4
  • 1.45e4
  • 1.50e4
87.96
  • 87.96
  • 87.65
  • 87.30
  • 86.53
  • 84.63
  • 84.34
  • 79.43
  • 77.78
  • 76.35
  • 75.81
  • 74.41
  • 74.37
  • 72.24
  • 71.05
  • 51.88
  • 51.56
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.65e3
  • 3.65e3
87.80
  • 87.80
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.99e3
  • 3.99e3
  • 8.20e3
86.66
  • 86.66
  • 72.53
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.14e3
  • 4.14e3
86.13
  • 86.13
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.28e3
  • 4.28e3
85.66
  • 85.66
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.46e3
  • 4.46e3
85.07
  • 85.07
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.55e3
  • 4.55e3
84.78
  • 84.78
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.74e3
  • 4.74e3
84.12
  • 84.12
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.95e3
  • 4.95e3
  • 1.06e4
83.42
  • 83.42
  • 64.49
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.19e3
  • 5.19e3
82.61
  • 82.61
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.31e3
  • 5.31e3
82.21
  • 82.21
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.89e3
  • 5.89e3
80.28
  • 80.28
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.04e3
  • 6.04e3
79.78
  • 79.78
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.15e3
  • 6.15e3
79.40
  • 79.40
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
6.18e3
  • 6.18e3
79.32
  • 79.32
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.19e3
  • 6.19e3
79.29
  • 79.29
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.41e3
  • 6.41e3
78.54
  • 78.54
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.83e3
  • 6.83e3
77.12
  • 77.12
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.90e3
  • 6.90e3
76.89
  • 76.89
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.58e3
  • 7.58e3
  • 1.05e4
  • 1.18e4
74.62
  • 74.62
  • 65.00
  • 60.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
8.53e3
  • 8.53e3
71.44
  • 71.44
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.61e3
  • 8.61e3
71.18
  • 71.18
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.52e3
  • 9.52e3
68.11
  • 68.11
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.58e3
  • 9.58e3
67.93
  • 67.93
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
9.94e3
  • 9.94e3
  • 1.02e4
  • 1.21e4
66.72
  • 66.72
  • 65.69
  • 59.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.14e4
  • 1.14e4
61.67
  • 61.67
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.15e4
  • 1.15e4
61.56
  • 61.56
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.50e4
55.16
  • 55.16
  • 49.94
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species17 genesCompare expression
Bilateria23 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000021945.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000021945.

Cross-references

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