D. rerio Gene: tlr4bb - ENSDARG00000022048 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000022048
Nametlr4bb
Descriptiontoll-like receptor 4b, duplicate b [Source:ZFIN;Acc:ZDB-GENE-040219-9]
OrganismDanio rerio (zebrafish)
Synonym(s)tir4.2, tlr4b

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
3.97e3
  • 3.97e3
  • 7.75e3
  • 9.87e3
  • 1.02e4
  • 1.04e4
  • 1.09e4
  • 1.16e4
  • 1.21e4
86.58104
  • 86.58104
  • 73.79963
  • 66.64976
  • 65.60979
  • 64.68900
  • 63.31813
  • 60.69907
  • 59.07907
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007026forebrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
4.23e3
  • 4.23e3
  • 4.55e3
  • 4.55e3
85.71092
  • 85.71092
  • 84.61200
  • 84.61200
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000026Segmentation:14-19 somites
4.55e3
  • 4.55e3
84.61200
  • 84.61200
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
5.38e3
  • 5.38e3
  • 8.33e3
  • 8.46e3
  • 8.46e3
  • 8.71e3
  • 9.05e3
  • 1.14e4
  • 1.20e4
81.81481
  • 81.81481
  • 71.86318
  • 71.41842
  • 71.41842
  • 70.57472
  • 69.42923
  • 61.52495
  • 59.35640
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
5.92e3
  • 5.92e3
  • 7.97e3
  • 9.11e3
  • 9.58e3
  • 9.58e3
  • 9.87e3
79.99324
  • 79.99324
  • 73.06846
  • 69.22062
  • 67.63186
  • 67.63186
  • 66.64976
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
6.97e3
  • 6.97e3
  • 6.97e3
  • 7.40e3
  • 7.84e3
  • 7.84e3
76.46045
  • 76.46045
  • 76.46045
  • 74.98984
  • 73.51758
  • 73.51758
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001637artery
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.40e3
  • 7.40e3
  • 7.40e3
  • 7.97e3
  • 9.42e3
  • 9.42e3
74.99322
  • 74.99322
  • 74.99322
  • 73.06846
  • 68.17336
  • 68.17336
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002540lateral line system
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.46e3
  • 8.46e3
  • 8.46e3
71.41842
  • 71.41842
  • 71.41842
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.75e3
  • 8.75e3
  • 9.42e3
  • 9.52e3
  • 9.62e3
  • 9.62e3
70.43594
  • 70.43594
  • 68.16153
  • 67.83009
  • 67.48142
  • 67.48142
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
8.88e3
  • 8.88e3
  • 8.88e3
  • 9.01e3
  • 9.16e3
  • 9.52e3
69.98310
  • 69.98310
  • 69.98310
  • 69.54493
  • 69.02902
  • 67.83009
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.01e3
  • 9.01e3
  • 9.62e3
  • 9.62e3
69.54493
  • 69.54493
  • 67.48142
  • 67.48142
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.06745
  • 33.06745
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.16e4
  • 2.16e4
26.89142
  • 26.89142
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX908770
EnsemblENSDARG00000022048 (tlr4bb)
Uniprot/SPTREMBLB8A691, B8A691_DANRE
ZFINZDB-GENE-040219-9 (tlr4bb)

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