D. rerio Gene: opn4a - ENSDARG00000022098 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000022098
Nameopn4a
Descriptionopsin 4a (melanopsin) [Source:ZFIN;Acc:ZDB-GENE-070111-2]
OrganismDanio rerio (zebrafish)
Synonym(s)opn4, opn4d, opn4m1
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
7.58e3
  • 7.58e3
74.63
  • 74.63
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.16e4
  • 1.16e4
  • 1.36e4
  • 1.49e4
61.10
  • 61.10
  • 54.53
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001928preoptic area
  • ZFS:0000035Larval:Protruding-mouth
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
1.29e4
  • 1.29e4
  • 1.49e4
  • 1.49e4
56.65
  • 56.65
  • 49.99
  • 49.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000633caudal tuberculum
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.82e4
  • 1.82e4
39.10
  • 39.10
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.07
  • 39.07
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
  • 2.26e4
32.04
  • 32.04
  • 24.42
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
2.06e4
  • 2.06e4
  • 2.42e4
30.94
  • 30.94
  • 19.01
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000022098.

Cross-references

EnsemblENSDARG00000022098 (opn4a)
ZFINZDB-GENE-070111-2 (opn4a)
EMBLBX649277, CT573135
Uniprot/SPTREMBLF1QGX5, F1QGX5_DANRE

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