D. rerio Gene: obscnb - ENSDARG00000022101 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000022101
Nameobscnb
Descriptionobscurin, cytoskeletal calmodulin and titin-interacting RhoGEF b [Source:ZFIN;Acc:ZDB-GENE-070119-5]
OrganismDanio rerio (zebrafish)
Synonym(s)obscnl, obscurin a, si:rp71-18a8.2
Orthologs(s)17 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
554
  • 554
98.15
  • 98.15
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
904
  • 904
96.98
  • 96.98
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.00e3
  • 2.00e3
93.32
  • 93.32
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.62e3
  • 2.62e3
  • 3.53e3
91.22
  • 91.22
  • 88.20
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
2.81e3
  • 2.81e3
  • 6.91e3
  • 9.78e3
  • 1.06e4
  • 1.40e4
90.61
  • 90.61
  • 76.87
  • 67.26
  • 64.52
  • 53.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
3.76e3
  • 3.76e3
87.40
  • 87.40
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.67e3
  • 7.67e3
74.32
  • 74.32
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.39e3
  • 8.39e3
71.92
  • 71.92
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.99e3
  • 9.99e3
66.55
  • 66.55
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.24e4
  • 1.24e4
  • 1.43e4
58.40
  • 58.40
  • 52.03
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.91
  • 47.91
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.06
  • 40.06
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.83e4
  • 1.83e4
38.70
  • 38.70
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
38.08
  • 38.08
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.08
  • 36.08
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Euteleostomi2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000022101.

Cross-references

EnsemblENSDARG00000022101 (obscnb)
ZFINZDB-GENE-070119-5 (obscnb)
Uniprot/SPTREMBLE7EYG1, E7EYG1_DANRE, X1WFS0, X1WFS0_DANRE

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