D. rerio Gene: pdzk1 - ENSDARG00000022261 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000022261
Namepdzk1
DescriptionPDZ domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-031222-1]
OrganismDanio rerio (zebrafish)
Synonym(s)cb1074, pdzk1, pdzk1l, wu:fa55e12, wu:fb65e01
Orthologs(s)20 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
379
  • 379
98.73
  • 98.73
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
395
  • 395
98.68
  • 98.68
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
604
  • 604
97.98
  • 97.98
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.34e3
  • 1.34e3
95.50
  • 95.50
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
2.14e3
  • 2.14e3
  • 1.07e4
  • 1.15e4
  • 1.27e4
  • 1.53e4
  • 1.64e4
  • 1.75e4
  • 1.78e4
  • 1.78e4
92.85
  • 92.85
  • 64.15
  • 61.56
  • 57.58
  • 48.64
  • 45.23
  • 41.29
  • 40.40
  • 40.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.58e3
  • 2.58e3
91.37
  • 91.37
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
4.81e3
  • 4.81e3
  • 1.15e4
  • 1.16e4
83.88
  • 83.88
  • 61.53
  • 61.06
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.90e3
  • 4.90e3
83.60
  • 83.60
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.45e3
  • 5.45e3
81.75
  • 81.75
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
6.86e3
  • 6.86e3
  • 8.49e3
  • 1.07e4
  • 1.14e4
  • 1.23e4
  • 1.47e4
  • 1.68e4
  • 1.77e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.80e4
  • 1.81e4
77.03
  • 77.03
  • 71.57
  • 64.10
  • 61.75
  • 58.98
  • 50.90
  • 43.83
  • 40.62
  • 40.56
  • 40.43
  • 40.38
  • 39.85
  • 39.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.99e3
  • 7.99e3
  • 1.55e4
73.23
  • 73.23
  • 48.15
AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000037Larval:Day 5
9.67e3
  • 9.67e3
  • 1.03e4
  • 1.05e4
  • 1.05e4
  • 1.08e4
  • 1.12e4
  • 1.12e4
  • 1.26e4
  • 1.49e4
67.63
  • 67.63
  • 65.61
  • 64.98
  • 64.98
  • 63.87
  • 62.48
  • 62.48
  • 57.87
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
  • 1.07e4
  • 1.42e4
65.61
  • 65.61
  • 64.27
  • 52.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001076intestinal bulb
  • ZFS:0000037Larval:Day 5
1.19e4
  • 1.19e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:0009622pronephric proximal straight tubule
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.49e4
57.14
  • 57.14
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.91
  • 54.91
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.38e4
  • 1.38e4
53.81
  • 53.81
AEIR
  • AEIR
UBERON:0007298pronephric proximal convoluted tubule
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
49.99
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
46.99
  • 46.99
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.32
  • 46.32
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.61e4
  • 1.61e4
  • 1.75e4
46.00
  • 46.00
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.78e4
  • 1.78e4
40.37
  • 40.37
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.17e4
  • 2.17e4
27.41
  • 27.41
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.29e4
  • 2.29e4
23.42
  • 23.42
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000022261 (pdzk1)
ZFINZDB-GENE-031222-1 (pdzk1)
EMBLCU695204, CU914786
Uniprot/SPTREMBLF1QTX0, F1QTX0_DANRE

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