D. rerio Gene: trim35-34 - ENSDARG00000022271 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000022271
Nametrim35-34
Descriptiontripartite motif containing 35-34 [Source:ZFIN;Acc:ZDB-GENE-081030-23]
OrganismDanio rerio (zebrafish)
Synonym(s)ch1073-352h10.1
Orthologs(s)2 orthologs
Paralog(s)28 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
9.26e3
  • 9.26e3
  • 1.48e4
69.01
  • 69.01
  • 50.51
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.48e3
  • 9.48e3
68.24
  • 68.24
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.02e4
  • 1.02e4
  • 1.54e4
65.95
  • 65.95
  • 48.55
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.27
  • 59.27
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.37e4
  • 1.37e4
54.01
  • 54.01
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.44e4
  • 1.44e4
51.86
  • 51.86
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.52
  • 51.52
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.89
  • 46.89
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
33.12
  • 33.12
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
2.03e4
  • 2.03e4
  • 2.07e4
  • 2.09e4
32.12
  • 32.12
  • 30.80
  • 30.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.13e4
  • 2.13e4
28.63
  • 28.63
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.74
  • 25.74
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.28e4
  • 2.28e4
23.66
  • 23.66
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi2 species2 genesCompare expression

Orthology information comes from OMA : ENSDARG00000022271.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi25 genesCompare expression
Clupeocephala26 genesCompare expression
Euteleostomi28 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000022271.

Cross-references

EnsemblENSDARG00000022271 (trim35-34)
ZFINZDB-GENE-081030-23 (trim35-34)
EMBLCU539057
Uniprot/SPTREMBLB8JLS7, B8JLS7_DANRE

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