D. rerio Gene: nkx6.1 - ENSDARG00000022569 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000022569
Namenkx6.1
DescriptionNK6 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040718-178]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:92879

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
CL:0005000spinal cord interneuron
  • ZFS:0000029Pharyngula:Prim-5
2.47e3
  • 2.47e3
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
5.15e3
  • 5.15e3
  • 5.20e3
  • 5.25e3
  • 6.64e3
  • 1.10e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
5.29e3
  • 5.29e3
  • 1.28e4
  • 1.35e4
  • 1.39e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000711DEL
  • ZFS:0000017Gastrula:50%-epiboly
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.90e3
  • 7.90e3
  • 2.33e4
AEIR
  • AEIR
  • AEIR
UBERON:0003921pancreas primordium
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
8.22e3
  • 8.22e3
  • 1.11e4
AEIR
  • AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000026Segmentation:14-19 somites
8.88e3
  • 8.88e3
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.21e3
  • 9.21e3
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
9.52e3
  • 9.52e3
  • 1.33e4
AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
9.86e3
  • 9.86e3
  • 1.29e4
  • 1.33e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002346neurectoderm
  • ZFS:0000022Gastrula:Bud
9.86e3
  • 9.86e3
AEIR
  • AEIR
UBERON:0003922pancreatic epithelial bud
  • ZFS:0000029Pharyngula:Prim-5
1.06e4
  • 1.06e4
AEIR
  • AEIR
UBERON:0003923dorsal pancreatic bud
  • ZFS:0000029Pharyngula:Prim-5
1.11e4
  • 1.11e4
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000029Pharyngula:Prim-5
1.18e4
  • 1.18e4
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
  • 1.49e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000033Hatching:Long-pec
1.36e4
  • 1.36e4
AEIR
  • AEIR
CL:0000223endodermal cell
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010286midbrain neural tube
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2007035spinal cord neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0001016nervous system
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0005723floor plate spinal cord region
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0007283presumptive shield
  • ZFS:0000017Gastrula:50%-epiboly
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2007043hindbrain neural tube
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
AEIR
  • AEIR
CL:0000100motor neuron
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2001256lateral floor plate
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX000991
EnsemblENSDARG00000022569 (nkx6.1)
Uniprot/SPTREMBLF1QUC3, F1QUC3_DANRE, F1QV23, F1QV23_DANRE
ZFINZDB-GENE-040718-178 (nkx6.1)

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