D. rerio Gene: otud3 - ENSDARG00000022648 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000022648
Nameotud3
DescriptionOTU deubiquitinase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2509]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:85911

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000066fully formed stage
2.53e3
  • 2.53e3
  • 4.37e3
  • 4.93e3
  • 6.48e3
  • 6.58e3
  • 6.58e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.91e3
  • 6.91e3
  • 6.97e3
  • 6.97e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.84e3
  • 8.88e3
  • 8.88e3
  • 1.49e4
91.46189
  • 91.46189
  • 85.21917
  • 83.32826
  • 78.11654
  • 77.76763
  • 77.76763
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 76.65821
  • 76.65821
  • 76.46123
  • 76.46045
  • 74.99322
  • 74.99322
  • 74.99153
  • 74.98902
  • 73.51758
  • 69.98817
  • 69.98817
  • 49.80903
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.70e3
  • 4.70e3
84.10958
  • 84.10958
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.33e3
  • 6.33e3
78.62201
  • 78.62201
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.41e3
  • 6.41e3
78.33809
  • 78.33809
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.66e3
  • 6.66e3
77.49649
  • 77.49649
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.68e3
  • 6.68e3
77.42889
  • 77.42889
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.78e3
  • 6.78e3
77.09830
  • 77.09830
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.82e3
  • 6.82e3
76.94219
  • 76.94219
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
6.87e3
  • 6.87e3
  • 1.48e4
76.77905
  • 76.77905
  • 49.91550
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.89e3
  • 6.89e3
76.73263
  • 76.73263
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.15e3
  • 7.15e3
75.84371
  • 75.84371
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.29e3
  • 7.29e3
75.35024
  • 75.35024
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
7.97e3
  • 7.97e3
73.06391
  • 73.06391
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.18e3
  • 8.18e3
72.36577
  • 72.36577
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
8.49e3
  • 8.49e3
  • 1.01e4
  • 1.04e4
  • 1.05e4
  • 1.07e4
71.30891
  • 71.30891
  • 65.87971
  • 64.86911
  • 64.43486
  • 63.79048
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.69e3
  • 8.69e3
  • 1.49e4
70.64377
  • 70.64377
  • 49.65271
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.75e3
  • 8.75e3
70.43689
  • 70.43689
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.27e3
  • 9.27e3
68.68492
  • 68.68492
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
9.78e3
  • 9.78e3
66.94238
  • 66.94238
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX548066, BX649542
EnsemblENSDARG00000022648 (otud3)
Uniprot/SPTREMBLF1R341, F1R341_DANRE
ZFINZDB-GENE-040426-2509 (otud3)

Do not show this banner again