D. rerio Gene: snx4 - ENSDARG00000022659 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000022659
Namesnx4
Descriptionsorting nexin 4 [Source:ZFIN;Acc:ZDB-GENE-030131-1923]
OrganismDanio rerio (zebrafish)
Synonym(s)im:6971267, wu:fb92d09, zgc:113437
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.93e3
  • 1.93e3
93.54
  • 93.54
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.07e3
  • 2.07e3
93.09
  • 93.09
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
2.49e3
  • 2.49e3
  • 2.99e3
  • 3.92e3
  • 4.24e3
  • 5.67e3
91.66
  • 91.66
  • 89.99
  • 86.86
  • 85.81
  • 81.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.67e3
  • 2.67e3
91.08
  • 91.08
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.78e3
  • 2.78e3
  • 5.80e3
  • 6.00e3
  • 6.19e3
  • 6.27e3
  • 6.28e3
  • 6.35e3
  • 6.76e3
  • 6.86e3
  • 6.99e3
  • 7.00e3
  • 7.69e3
  • 8.08e3
  • 8.80e3
  • 9.96e3
  • 9.96e3
  • 1.05e4
  • 1.39e4
  • 1.46e4
  • 1.50e4
90.70
  • 90.70
  • 80.57
  • 79.90
  • 79.29
  • 79.01
  • 78.97
  • 78.74
  • 77.35
  • 77.04
  • 76.60
  • 76.56
  • 74.25
  • 72.94
  • 70.52
  • 66.66
  • 66.65
  • 64.69
  • 53.44
  • 51.12
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.80e3
  • 2.80e3
90.64
  • 90.64
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.91e3
  • 2.91e3
90.26
  • 90.26
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.96e3
  • 2.96e3
90.08
  • 90.08
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.98e3
  • 2.98e3
90.03
  • 90.03
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.03e3
  • 3.03e3
89.87
  • 89.87
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.07e3
  • 3.07e3
89.71
  • 89.71
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.37e3
  • 3.37e3
  • 5.00e3
88.73
  • 88.73
  • 83.26
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.42e3
  • 3.42e3
  • 4.87e3
88.56
  • 88.56
  • 83.68
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.48e3
  • 3.48e3
88.36
  • 88.36
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.80e3
  • 3.80e3
87.27
  • 87.27
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.91e3
  • 3.91e3
86.92
  • 86.92
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
3.92e3
  • 3.92e3
  • 4.18e3
  • 4.35e3
  • 4.59e3
  • 4.75e3
  • 5.68e3
  • 5.80e3
  • 6.03e3
  • 6.14e3
  • 6.59e3
86.88
  • 86.88
  • 86.00
  • 85.42
  • 84.63
  • 84.09
  • 80.97
  • 80.58
  • 79.82
  • 79.46
  • 77.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.99e3
  • 3.99e3
86.65
  • 86.65
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.16e3
  • 4.16e3
  • 5.26e3
86.06
  • 86.06
  • 82.38
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.22e3
  • 4.22e3
85.88
  • 85.88
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.24e3
  • 4.24e3
85.81
  • 85.81
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
4.45e3
  • 4.45e3
  • 5.73e3
  • 1.21e4
85.09
  • 85.09
  • 80.83
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.59e3
  • 4.59e3
84.63
  • 84.63
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.06e3
  • 5.06e3
83.05
  • 83.05
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
5.12e3
  • 5.12e3
  • 6.03e3
  • 6.15e3
  • 7.17e3
  • 7.75e3
  • 7.89e3
82.86
  • 82.86
  • 79.82
  • 79.42
  • 75.98
  • 74.06
  • 73.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.15e3
  • 5.15e3
82.77
  • 82.77
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.15e3
  • 5.15e3
82.76
  • 82.76
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
5.23e3
  • 5.23e3
  • 5.36e3
  • 7.18e3
  • 7.77e3
82.50
  • 82.50
  • 82.04
  • 75.96
  • 73.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
6.25e3
  • 6.25e3
  • 6.33e3
  • 6.49e3
79.08
  • 79.08
  • 78.81
  • 78.28
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.38e3
  • 6.38e3
78.64
  • 78.64
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.75e3
  • 6.75e3
77.41
  • 77.41
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.09e3
  • 7.09e3
76.27
  • 76.27
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.49e3
  • 7.49e3
74.92
  • 74.92
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
7.97e3
  • 7.97e3
  • 8.54e3
  • 8.71e3
  • 8.96e3
  • 8.96e3
  • 9.96e3
  • 1.08e4
  • 1.14e4
  • 1.20e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
73.32
  • 73.32
  • 71.42
  • 70.82
  • 69.99
  • 69.99
  • 66.65
  • 63.87
  • 61.88
  • 59.98
  • 58.80
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.20e4
  • 1.20e4
  • 1.27e4
  • 1.29e4
  • 1.29e4
59.97
  • 59.97
  • 57.47
  • 56.79
  • 56.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

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