D. rerio Gene: apobb.1 - ENSDARG00000022767 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000022767
Nameapobb.1
Descriptionapolipoprotein Bb, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9732]
OrganismDanio rerio (zebrafish)
Synonym(s)apobb, apobl, cb235, hm:zeh1207, sb:cb235, si:ch211-219i10.1, wu:fb39c11, wu:fc51e12, zeh1207
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
38.8
  • 38.8
  • 144
  • 200
  • 231
  • 282
  • 298
  • 299
  • 305
  • 360
  • 682
99.87
  • 99.87
  • 99.52
  • 99.33
  • 99.23
  • 99.06
  • 99.01
  • 99.00
  • 98.98
  • 98.80
  • 97.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
135
  • 135
99.55
  • 99.55
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000049segmentation
152
  • 152
  • 157
  • 166
  • 177
  • 222
  • 231
  • 246
  • 356
  • 386
  • 916
  • 1.62e3
  • 3.64e3
  • 7.17e3
  • 8.22e3
  • 9.38e3
  • 1.08e4
  • 1.24e4
  • 1.31e4
99.49
  • 99.49
  • 99.48
  • 99.45
  • 99.41
  • 99.26
  • 99.23
  • 99.18
  • 98.81
  • 98.71
  • 96.94
  • 94.59
  • 87.81
  • 76.00
  • 72.47
  • 68.58
  • 63.88
  • 58.63
  • 56.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
216
  • 216
99.28
  • 99.28
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
231
  • 231
  • 314
  • 415
99.23
  • 99.23
  • 98.95
  • 98.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
384
  • 384
98.72
  • 98.72
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
445
  • 445
98.51
  • 98.51
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
708
  • 708
  • 1.40e3
  • 3.90e3
  • 4.63e3
  • 1.33e4
  • 1.60e4
97.63
  • 97.63
  • 95.30
  • 86.94
  • 84.49
  • 55.31
  • 46.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.25e3
  • 1.25e3
  • 1.43e4
95.81
  • 95.81
  • 52.22
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.22e3
  • 4.22e3
85.88
  • 85.88
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.28e3
  • 4.28e3
85.66
  • 85.66
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
4.90e3
  • 4.90e3
  • 1.03e4
  • 1.55e4
83.60
  • 83.60
  • 65.36
  • 47.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.09e3
  • 5.09e3
82.94
  • 82.94
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.46e3
  • 6.46e3
  • 2.26e4
78.37
  • 78.37
  • 24.45
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 7.97e3
74.99
  • 74.99
  • 73.32
AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
8.96e3
  • 8.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 1.03e4
  • 1.05e4
  • 1.14e4
  • 1.14e4
  • 1.14e4
  • 1.15e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
  • 1.23e4
  • 1.28e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
69.99
  • 69.99
  • 66.65
  • 66.65
  • 66.65
  • 65.61
  • 64.69
  • 61.75
  • 61.75
  • 61.75
  • 61.53
  • 60.70
  • 60.70
  • 60.70
  • 60.70
  • 58.80
  • 57.14
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.29e4
  • 1.29e4
56.93
  • 56.93
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.15
  • 55.15
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
1.44e4
  • 1.44e4
51.74
  • 51.74
AEIR
  • AEIR
UBERON:0000061anatomical structure
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.54e4
  • 1.54e4
48.50
  • 48.50
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
40.98
  • 40.98
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.46
  • 37.46
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.49
  • 36.49
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.52
  • 32.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000022767.

Cross-references

EnsemblENSDARG00000022767 (apobb.1)
ZFINZDB-GENE-030131-9732 (apobb.1)
EMBLBX511210
Uniprot/SPTREMBLQ5TZ29, Q5TZ29_DANRE

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