D. rerio Gene: ccdc12 - ENSDARG00000023003 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000023003
Nameccdc12
Descriptioncoiled-coil domain containing 12 [Source:ZFIN;Acc:ZDB-GENE-040801-108]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:101038
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.17e3
  • 1.17e3
  • 2.23e3
96.09
  • 96.09
  • 92.54
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.37e3
  • 1.37e3
  • 1.39e3
95.40
  • 95.40
  • 95.35
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.40e3
  • 1.40e3
95.33
  • 95.33
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.66e3
  • 1.66e3
  • 1.86e3
  • 2.61e3
  • 2.90e3
  • 5.78e3
94.44
  • 94.44
  • 93.76
  • 91.25
  • 90.30
  • 80.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.99e3
  • 1.99e3
  • 3.67e3
93.33
  • 93.33
  • 87.72
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.00e3
  • 2.00e3
93.30
  • 93.30
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.49e3
  • 2.49e3
91.66
  • 91.66
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.09e3
  • 3.09e3
89.66
  • 89.66
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.20e3
  • 3.20e3
89.28
  • 89.28
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.20e3
  • 3.20e3
  • 6.95e3
89.27
  • 89.27
  • 76.73
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.32e3
  • 3.32e3
88.88
  • 88.88
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.33e3
  • 3.33e3
88.85
  • 88.85
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.50e3
  • 3.50e3
  • 8.16e3
88.27
  • 88.27
  • 72.69
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.68e3
  • 3.68e3
87.68
  • 87.68
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.06e3
  • 4.06e3
86.41
  • 86.41
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.88e3
  • 4.88e3
83.65
  • 83.65
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.14e3
  • 5.14e3
82.78
  • 82.78
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.38e3
  • 5.38e3
81.99
  • 81.99
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.12e3
  • 6.12e3
79.50
  • 79.50
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.21e3
  • 6.21e3
79.19
  • 79.19
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.24e3
  • 6.24e3
79.11
  • 79.11
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.88e3
  • 6.88e3
76.95
  • 76.95
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.19e3
  • 7.19e3
75.93
  • 75.93
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
7.22e3
  • 7.22e3
75.84
  • 75.84
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.05e4
  • 1.05e4
64.95
  • 64.95
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.49e4
  • 1.49e4
  • 1.50e4
  • 1.50e4
49.95
  • 49.95
  • 49.92
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.94
  • 49.94
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.14
  • 47.14
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species19 genesCompare expression
Bilateria24 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000023003.

Cross-references

EnsemblENSDARG00000023003 (ccdc12)
ZFINZDB-GENE-040801-108 (ccdc12)
EMBLCABZ01033037, CABZ01033038
Uniprot/SPTREMBLF1RCD0, F1RCD0_DANRE

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