D. rerio Gene: vsnl1a - ENSDARG00000023228 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000023228
Namevsnl1a
Descriptionvisinin-like 1a [Source:ZFIN;Acc:ZDB-GENE-041001-211]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-15f12.11, si:dkey-30j22.11, si:dkey-30j22.11 {eco:0000313|embl:aah85571.1,gn eco:0000313|zfin:zdb-gene-041001-211}, vsnl1, zgc:103644
Orthologs(s)16 orthologs
Paralog(s)49 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
157
  • 157
  • 6.65e3
  • 1.45e4
99.48
  • 99.48
  • 77.75
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
887
  • 887
  • 943
97.03
  • 97.03
  • 96.85
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
900
  • 900
  • 3.87e3
  • 5.02e3
  • 1.11e4
96.99
  • 96.99
  • 87.06
  • 83.18
  • 62.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000104life cycle
1.02e3
  • 1.02e3
  • 2.57e3
  • 3.10e3
  • 4.51e3
  • 4.62e3
  • 8.35e3
  • 9.45e3
  • 1.33e4
  • 1.37e4
  • 1.50e4
96.59
  • 96.59
  • 91.38
  • 89.64
  • 84.89
  • 84.55
  • 72.05
  • 68.36
  • 55.49
  • 54.22
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
1.44e3
  • 1.44e3
  • 2.48e3
  • 4.59e3
  • 7.85e3
  • 8.32e3
  • 9.10e3
  • 9.53e3
  • 1.78e4
95.18
  • 95.18
  • 91.71
  • 84.64
  • 73.71
  • 72.14
  • 69.52
  • 68.10
  • 40.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.76e3
  • 1.76e3
  • 2.12e3
  • 2.35e3
94.10
  • 94.10
  • 92.92
  • 92.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.00e3
  • 3.00e3
89.95
  • 89.95
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.15e3
  • 7.15e3
  • 1.08e4
76.07
  • 76.07
  • 63.99
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.33e3
  • 9.33e3
68.77
  • 68.77
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.46
  • 57.46
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.95
  • 52.95
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.19
  • 52.19
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.53e4
  • 1.53e4
  • 1.59e4
48.80
  • 48.80
  • 46.87
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
1.56e4
  • 1.56e4
  • 1.80e4
47.72
  • 47.72
  • 39.58
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.05
  • 45.05
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.68
  • 42.68
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.69
  • 41.69
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.12
  • 40.12
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.69
  • 39.69
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.74
  • 33.74
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression
Chordata2 genesCompare expression
Eukaryota49 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000023228.

Cross-references

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