D. rerio Gene: rps27.1 - ENSDARG00000023298 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000023298
Namerps27.1
Descriptionribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
OrganismDanio rerio (zebrafish)
Synonym(s)fa18f12, wu:fa18f12, zgc:109888
Orthologs(s)44 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
78.1
  • 78.1
99.74
  • 99.74
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
82.0
  • 82.0
99.73
  • 99.73
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
83.0
  • 83.0
99.73
  • 99.73
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
88.9
  • 88.9
  • 97.7
  • 101
  • 106
  • 112
  • 114
  • 132
  • 149
  • 245
  • 313
99.71
  • 99.71
  • 99.68
  • 99.67
  • 99.65
  • 99.63
  • 99.62
  • 99.56
  • 99.51
  • 99.18
  • 98.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
89.4
  • 89.4
  • 118
  • 122
99.70
  • 99.70
  • 99.61
  • 99.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
93.9
  • 93.9
99.69
  • 99.69
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
99.8
  • 99.8
  • 114
  • 119
  • 123
  • 126
  • 140
  • 147
  • 167
  • 185
  • 196
  • 244
  • 250
  • 359
  • 1.42e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
99.67
  • 99.67
  • 99.62
  • 99.60
  • 99.59
  • 99.58
  • 99.53
  • 99.51
  • 99.44
  • 99.39
  • 99.35
  • 99.19
  • 99.17
  • 98.80
  • 95.25
  • 83.33
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.52
  • 69.99
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
105
  • 105
99.65
  • 99.65
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
115
  • 115
99.62
  • 99.62
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
118
  • 118
  • 125
99.61
  • 99.61
  • 99.58
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
130
  • 130
99.57
  • 99.57
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
132
  • 132
99.56
  • 99.56
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
133
  • 133
  • 263
99.56
  • 99.56
  • 99.12
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
136
  • 136
99.55
  • 99.55
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
139
  • 139
99.54
  • 99.54
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
141
  • 141
  • 259
99.53
  • 99.53
  • 99.14
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
144
  • 144
  • 186
  • 242
  • 242
  • 250
  • 289
99.52
  • 99.52
  • 99.38
  • 99.19
  • 99.19
  • 99.17
  • 99.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
146
  • 146
99.51
  • 99.51
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
177
  • 177
99.41
  • 99.41
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
191
  • 191
99.36
  • 99.36
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
198
  • 198
99.34
  • 99.34
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
210
  • 210
99.30
  • 99.30
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
219
  • 219
99.27
  • 99.27
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
228
  • 228
99.24
  • 99.24
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
228
  • 228
99.24
  • 99.24
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
235
  • 235
  • 241
99.22
  • 99.22
  • 99.20
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
269
  • 269
  • 272
  • 299
  • 755
99.10
  • 99.10
  • 99.09
  • 99.00
  • 97.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
435
  • 435
98.55
  • 98.55
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
461
  • 461
98.46
  • 98.46
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
476
  • 476
  • 534
  • 749
  • 943
  • 1.42e3
98.41
  • 98.41
  • 98.22
  • 97.50
  • 96.85
  • 95.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
675
  • 675
97.74
  • 97.74
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.76e3
  • 3.76e3
87.40
  • 87.40
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species37 genesCompare expression
Bilateria25 species44 genesCompare expression

Orthology information comes from OMA : ENSDARG00000023298.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Neopterygii2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000023298.

Cross-references

EnsemblENSDARG00000023298 (rps27.1)
ZFINZDB-GENE-050522-549 (rps27.1)
EMBLBC095031, BC165475, CR450791, CU468271
Uniprot/SPTREMBLQ4VBV2, Q4VBV2_DANRE

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