D. rerio Gene: nr5a1b - ENSDARG00000023362 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000023362
Namenr5a1b
Descriptionnuclear receptor subfamily 5, group A, member 1b [Source:ZFIN;Acc:ZDB-GENE-040702-6]
OrganismDanio rerio (zebrafish)
Synonym(s)ff1d, nr5a2l, nr5a2lgn, sf1-b, si:zc167p9.2
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001894diencephalon
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
  • 8.79e3
  • 1.04e4
  • 1.06e4
  • 1.09e4
  • 1.10e4
  • 1.10e4
  • 1.16e4
74.99
  • 74.99
  • 70.57
  • 65.19
  • 64.56
  • 63.61
  • 63.14
  • 63.02
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.39e4
66.66
  • 66.66
  • 53.55
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.24e4
  • 1.49e4
  • 1.49e4
62.50
  • 62.50
  • 58.32
  • 49.99
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.46
  • 59.46
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.93
  • 56.93
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
1.56e4
  • 1.56e4
  • 2.06e4
  • 2.17e4
  • 2.45e4
  • 2.48e4
47.77
  • 47.77
  • 30.86
  • 27.19
  • 17.96
  • 17.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
1.74e4
  • 1.74e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
  • 1.83e4
  • 1.83e4
41.77
  • 41.77
  • 40.51
  • 40.38
  • 40.32
  • 40.18
  • 39.85
  • 38.72
  • 38.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.74e4
  • 1.74e4
  • 1.75e4
41.75
  • 41.75
  • 41.34
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.88
  • 40.88
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.62
  • 38.62
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.67
  • 30.67
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.69e4
  • 2.69e4
9.80
  • 9.80
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000023362.

Cross-references

EnsemblENSDARG00000023362 (nr5a1b)
ZFINZDB-GENE-040702-6 (nr5a1b)
EMBLAL772368, AY212920, BC162252, BC162260, FP016184, FP085418
Uniprot/SPTREMBLQ800U8, Q800U8_DANRE

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