D. rerio Gene: pinx1 - ENSDARG00000023532 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000023532
Namepinx1
DescriptionPIN2/TERF1 interacting, telomerase inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-030515-2]
OrganismDanio rerio (zebrafish)
Synonym(s)cb342, lpts, zlpts

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • UBERON:00072322 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000014Blastula:Sphere
  • UBERON:0000109gastrula stage
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
820
  • 820
  • 2.82e3
  • 3.38e3
  • 3.43e3
  • 3.65e3
  • 3.80e3
  • 4.34e3
  • 4.51e3
  • 4.60e3
  • 5.33e3
  • 6.09e3
  • 6.62e3
  • 6.73e3
  • 6.73e3
  • 7.44e3
  • 7.84e3
  • 8.26e3
  • 8.88e3
  • 1.18e4
  • 1.38e4
  • 1.45e4
97.23093
  • 97.23093
  • 90.48661
  • 88.58750
  • 88.40510
  • 87.66483
  • 87.17605
  • 85.32551
  • 84.75030
  • 84.44641
  • 81.98283
  • 79.42978
  • 77.62536
  • 77.26767
  • 77.26767
  • 74.87286
  • 73.51758
  • 72.07287
  • 69.98817
  • 59.99662
  • 53.43805
  • 51.11845
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
923
  • 923
  • 1.11e4
  • 1.11e4
  • 1.17e4
  • 1.28e4
96.88295
  • 96.88295
  • 62.47802
  • 62.47802
  • 60.38795
  • 56.85769
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.58e3
  • 1.58e3
94.65111
  • 94.65111
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.81e3
  • 1.81e3
93.88234
  • 93.88234
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.87e3
  • 1.87e3
93.67235
  • 93.67235
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.60e3
  • 2.60e3
91.22326
  • 91.22326
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
2.86e3
  • 2.86e3
  • 1.27e4
  • 1.28e4
90.34137
  • 90.34137
  • 57.11581
  • 56.78945
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
2.87e3
  • 2.87e3
  • 1.18e4
  • 1.20e4
  • 1.23e4
  • 1.27e4
90.29259
  • 90.29259
  • 59.98310
  • 59.35640
  • 58.31981
  • 57.11581
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
2.93e3
  • 2.93e3
  • 4.51e3
  • 4.54e3
90.08555
  • 90.08555
  • 84.77278
  • 84.67450
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
2.95e3
  • 2.95e3
  • 4.81e3
  • 4.83e3
  • 5.53e3
  • 6.16e3
90.04563
  • 90.04563
  • 83.73853
  • 83.66498
  • 81.31401
  • 79.17080
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.04e3
  • 3.04e3
89.71490
  • 89.71490
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.09e3
  • 3.09e3
89.56619
  • 89.56619
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
3.16e3
  • 3.16e3
  • 3.62e3
  • 3.68e3
  • 4.00e3
  • 4.41e3
  • 4.53e3
  • 5.23e3
  • 5.24e3
  • 6.56e3
  • 7.97e3
89.31945
  • 89.31945
  • 87.77534
  • 87.56189
  • 86.48336
  • 85.10506
  • 84.67551
  • 82.31234
  • 82.29017
  • 77.84723
  • 73.06687
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.73e3
  • 3.73e3
87.40304
  • 87.40304
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.02e3
  • 4.02e3
86.41590
  • 86.41590
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.48e3
  • 4.48e3
  • 6.27e3
84.87620
  • 84.87620
  • 78.82480
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.60e3
  • 4.60e3
84.46062
  • 84.46062
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.72e3
  • 4.72e3
84.04678
  • 84.04678
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.13e3
  • 5.13e3
  • 6.96e3
82.66207
  • 82.66207
  • 76.48243
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.15e3
  • 5.15e3
82.59679
  • 82.59679
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.67e3
  • 5.67e3
  • 9.93e3
80.84255
  • 80.84255
  • 66.43630
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.00e3
  • 6.00e3
79.72724
  • 79.72724
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
6.07e3
  • 6.07e3
  • 7.48e3
  • 9.33e3
  • 1.22e4
  • 1.26e4
79.47237
  • 79.47237
  • 74.73087
  • 68.45381
  • 58.66693
  • 57.47466
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
6.14e3
  • 6.14e3
79.23814
  • 79.23814
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.19e3
  • 6.19e3
79.07140
  • 79.07140
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.58e3
  • 6.58e3
77.77365
  • 77.77365
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
7.97e3
  • 7.97e3
  • 9.16e3
  • 9.58e3
  • 9.62e3
  • 9.87e3
  • 9.87e3
73.06846
  • 73.06846
  • 69.02902
  • 67.63186
  • 67.48142
  • 66.64976
  • 66.64976
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
8.94e3
  • 8.94e3
  • 1.12e4
  • 1.43e4
69.79954
  • 69.79954
  • 62.29537
  • 51.82080
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.60e3
  • 9.60e3
67.54748
  • 67.54748
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
1.20e4
  • 1.20e4
  • 1.25e4
  • 1.27e4
  • 1.27e4
59.35640
  • 59.35640
  • 57.67708
  • 57.12595
  • 57.12595
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.23e4
  • 1.23e4
  • 1.23e4
  • 1.32e4
58.31136
  • 58.31136
  • 58.31136
  • 55.53188
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.29e4
  • 1.29e4
56.48254
  • 56.48254
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX510941
EnsemblENSDARG00000023532 (pinx1)
Uniprot/SPTREMBLQ5RHK8, Q5RHK8_DANRE
ZFINZDB-GENE-030515-2 (pinx1)

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