D. rerio Gene: spon1b - ENSDARG00000023694 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000023694
Namespon1b
Descriptionspondin 1b [Source:ZFIN;Acc:ZDB-GENE-000427-10]
OrganismDanio rerio (zebrafish)
Synonym(s)cb1051, f-spondin2
Orthologs(s)13 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.49e3
  • 2.49e3
  • 4.09e3
91.65
  • 91.65
  • 86.32
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
90.69
  • 90.69
AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
2.80e3
  • 2.80e3
  • 3.45e3
  • 3.98e3
  • 4.98e3
  • 5.97e3
  • 5.97e3
  • 6.22e3
  • 6.89e3
  • 8.30e3
  • 8.30e3
  • 8.71e3
90.62
  • 90.62
  • 88.46
  • 86.66
  • 83.33
  • 80.00
  • 80.00
  • 79.16
  • 76.92
  • 72.22
  • 72.22
  • 70.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
3.32e3
  • 3.32e3
  • 4.98e3
  • 1.28e4
88.89
  • 88.89
  • 83.33
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003922pancreatic epithelial bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
3.32e3
  • 3.32e3
  • 3.73e3
  • 8.15e3
  • 9.96e3
88.89
  • 88.89
  • 87.50
  • 72.72
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.37e3
  • 3.37e3
  • 5.03e3
88.72
  • 88.72
  • 83.18
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.47e3
  • 3.47e3
88.40
  • 88.40
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.94e3
  • 3.94e3
  • 1.31e4
86.82
  • 86.82
  • 56.16
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.03e3
  • 4.03e3
86.50
  • 86.50
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
4.45e3
  • 4.45e3
  • 5.01e3
  • 5.10e3
  • 5.97e3
  • 6.94e3
  • 1.02e4
  • 1.34e4
  • 1.45e4
  • 1.46e4
  • 1.56e4
85.10
  • 85.10
  • 83.22
  • 82.92
  • 80.00
  • 76.76
  • 65.75
  • 55.14
  • 51.37
  • 51.16
  • 47.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
4.48e3
  • 4.48e3
  • 5.27e3
  • 5.60e3
84.99
  • 84.99
  • 82.35
  • 81.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.71e3
  • 4.71e3
84.23
  • 84.23
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.77e3
  • 4.77e3
  • 7.74e3
  • 8.60e3
84.05
  • 84.05
  • 74.10
  • 71.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.34e3
  • 5.34e3
  • 5.98e3
  • 1.02e4
  • 1.05e4
82.14
  • 82.14
  • 79.99
  • 65.77
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003921pancreas primordium
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
5.43e3
  • 5.43e3
  • 5.75e3
  • 6.22e3
81.81
  • 81.81
  • 80.76
  • 79.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.60e3
  • 5.60e3
  • 5.81e3
  • 6.72e3
  • 6.97e3
  • 7.47e3
  • 9.13e3
  • 9.67e3
81.24
  • 81.24
  • 80.55
  • 77.49
  • 76.66
  • 74.99
  • 69.43
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
5.98e3
  • 5.98e3
  • 5.98e3
  • 6.54e3
79.99
  • 79.99
  • 79.99
  • 78.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
5.98e3
  • 5.98e3
  • 5.98e3
  • 6.85e3
  • 9.40e3
  • 1.31e4
79.99
  • 79.99
  • 79.99
  • 77.07
  • 68.53
  • 56.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.51e3
  • 6.51e3
78.22
  • 78.22
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.96e3
  • 6.96e3
76.71
  • 76.71
AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.08e3
  • 7.08e3
  • 7.08e3
76.30
  • 76.30
  • 76.30
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
  • 7.91e3
74.99
  • 74.99
  • 73.52
AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.91e3
  • 7.91e3
  • 7.91e3
73.52
  • 73.52
  • 73.52
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
8.30e3
  • 8.30e3
  • 8.58e3
72.21
  • 72.21
  • 71.27
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.46e3
  • 8.46e3
71.68
  • 71.68
AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
8.54e3
  • 8.54e3
  • 9.19e3
  • 9.19e3
71.42
  • 71.42
  • 69.22
  • 69.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
8.88e3
  • 8.88e3
  • 1.04e4
70.28
  • 70.28
  • 65.10
AEIR
  • AEIR
  • AEIR
ZFA:0000197dorsal habenular nucleus (Danio)
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.33
  • 66.33
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.06
  • 66.06
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.04e4
  • 1.04e4
65.10
  • 65.10
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000066fully formed stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
1.08e4
  • 1.08e4
  • 1.12e4
  • 1.16e4
  • 1.25e4
  • 1.31e4
  • 1.34e4
  • 1.47e4
  • 1.55e4
  • 1.77e4
  • 1.78e4
  • 1.78e4
  • 1.80e4
63.98
  • 63.98
  • 62.56
  • 61.06
  • 58.12
  • 56.01
  • 54.97
  • 50.68
  • 47.97
  • 40.62
  • 40.56
  • 40.38
  • 39.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.61
  • 62.61
AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000027Segmentation:20-25 somites
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.17e4
  • 1.17e4
60.68
  • 60.68
AEIR
  • AEIR
UBERON:0003068axial mesoderm
  • ZFS:0000024Segmentation:5-9 somites
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0003923dorsal pancreatic bud
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000025Segmentation:10-13 somites
1.32e4
  • 1.32e4
  • 1.32e4
  • 1.36e4
55.97
  • 55.97
  • 55.86
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
1.34e4
  • 1.34e4
  • 1.36e4
55.24
  • 55.24
  • 54.53
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.28
  • 54.28
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.79
  • 53.79
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.39e4
  • 1.39e4
53.30
  • 53.30
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.63
  • 52.63
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.26
  • 51.26
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.93
  • 50.93
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.78
  • 50.78
AEIR
  • AEIR
UBERON:0002139subcommissural organ
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.97
  • 49.97
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.62e4
  • 1.62e4
  • 1.75e4
45.75
  • 45.75
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.73e4
  • 1.73e4
42.21
  • 42.21
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Orthology information comes from OMA : ENSDARG00000023694.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000023694.

Cross-references

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