D. rerio Gene: spon1b - ENSDARG00000023694 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000023694
Namespon1b
Descriptionspondin 1b [Source:ZFIN;Acc:ZDB-GENE-000427-10]
OrganismDanio rerio (zebrafish)
Synonym(s)cb1051, f-spondin2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003079floor plate
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
2.78e3
  • 2.78e3
  • 3.42e3
  • 3.95e3
  • 4.93e3
  • 5.92e3
  • 5.92e3
  • 6.17e3
  • 6.83e3
  • 8.22e3
  • 8.22e3
  • 8.63e3
90.62332
  • 90.62332
  • 88.45984
  • 86.66328
  • 83.32996
  • 79.99662
  • 79.99662
  • 79.16161
  • 76.91633
  • 72.21716
  • 72.21716
  • 70.82487
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
90.60382
  • 90.60382
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
3.13e3
  • 3.13e3
89.42210
  • 89.42210
AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
3.29e3
  • 3.29e3
  • 4.93e3
  • 1.27e4
88.88889
  • 88.88889
  • 83.32996
  • 57.13609
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003922pancreatic epithelial bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
3.29e3
  • 3.29e3
  • 3.70e3
  • 8.07e3
  • 9.87e3
88.88889
  • 88.88889
  • 87.50001
  • 72.72050
  • 66.65652
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.37e3
  • 3.37e3
  • 5.03e3
88.61643
  • 88.61643
  • 83.01844
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.44e3
  • 3.44e3
88.37338
  • 88.37338
AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
4.44e3
  • 4.44e3
  • 5.22e3
  • 5.55e3
84.99322
  • 84.99322
  • 82.34617
  • 81.24324
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
4.45e3
  • 4.45e3
  • 5.00e3
  • 5.10e3
  • 6.15e3
  • 6.93e3
  • 1.02e4
  • 1.33e4
  • 1.44e4
  • 1.45e4
  • 1.55e4
84.95898
  • 84.95898
  • 83.10724
  • 82.75903
  • 79.20673
  • 76.58758
  • 65.67661
  • 55.03835
  • 51.26764
  • 51.05795
  • 47.58762
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.77e3
  • 4.77e3
83.89252
  • 83.89252
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.29e3
  • 5.29e3
  • 5.92e3
  • 1.01e4
  • 1.04e4
82.13780
  • 82.13780
  • 79.99324
  • 65.77088
  • 64.97970
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003921pancreas primordium
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
5.38e3
  • 5.38e3
  • 5.69e3
  • 6.17e3
81.81481
  • 81.81481
  • 80.76417
  • 79.16161
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.55e3
  • 5.55e3
  • 5.76e3
  • 6.66e3
  • 6.91e3
  • 7.40e3
  • 9.05e3
  • 9.58e3
81.24324
  • 81.24324
  • 80.54711
  • 77.48818
  • 76.65821
  • 74.99153
  • 69.42923
  • 67.63186
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
5.86e3
  • 5.86e3
  • 8.54e3
  • 9.57e3
80.19918
  • 80.19918
  • 71.14471
  • 67.65420
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
5.92e3
  • 5.92e3
  • 5.92e3
  • 6.48e3
79.99324
  • 79.99324
  • 79.99324
  • 78.11654
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
5.92e3
  • 5.92e3
  • 5.92e3
  • 6.79e3
  • 9.33e3
  • 1.30e4
79.98986
  • 79.98986
  • 79.98986
  • 77.06812
  • 68.45909
  • 56.21790
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.51e3
  • 6.51e3
78.01365
  • 78.01365
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.96e3
  • 6.96e3
76.49604
  • 76.49604
AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.01e3
  • 7.01e3
  • 7.01e3
76.30396
  • 76.30396
  • 76.30396
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
7.37e3
  • 7.37e3
  • 1.30e4
75.08395
  • 75.08395
  • 56.06236
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
7.40e3
  • 7.40e3
  • 7.84e3
74.98815
  • 74.98815
  • 73.51758
AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.84e3
  • 7.84e3
  • 7.84e3
73.51758
  • 73.51758
  • 73.51758
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
8.22e3
  • 8.22e3
  • 8.52e3
72.20871
  • 72.20871
  • 71.20636
AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
8.46e3
  • 8.46e3
  • 9.11e3
  • 9.11e3
71.41842
  • 71.41842
  • 69.22062
  • 69.22062
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
8.81e3
  • 8.81e3
  • 1.03e4
70.21612
  • 70.21612
  • 65.02165
AEIR
  • AEIR
  • AEIR
ZFA:0000197dorsal habenular nucleus (Danio)
  • ZFS:0000033Hatching:Long-pec
9.86e3
  • 9.86e3
66.66666
  • 66.66666
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.01829
  • 66.01829
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
65.74057
  • 65.74057
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.03e4
  • 1.03e4
65.02422
  • 65.02422
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000066fully formed stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
1.07e4
  • 1.07e4
  • 1.11e4
  • 1.15e4
  • 1.24e4
  • 1.30e4
  • 1.34e4
  • 1.46e4
  • 1.54e4
  • 1.76e4
  • 1.77e4
  • 1.79e4
63.89784
  • 63.89784
  • 62.47810
  • 60.97639
  • 58.02482
  • 55.91920
  • 54.87678
  • 50.68197
  • 47.86044
  • 40.49306
  • 40.25570
  • 39.64022
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000027Segmentation:20-25 somites
1.11e4
  • 1.11e4
62.49830
  • 62.49830
AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000031Pharyngula:Prim-25
1.11e4
  • 1.11e4
62.49323
  • 62.49323
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.25981
  • 62.25981
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.17824
  • 61.17824
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.16e4
  • 1.16e4
60.68048
  • 60.68048
AEIR
  • AEIR
UBERON:0003068axial mesoderm
  • ZFS:0000024Segmentation:5-9 somites
1.23e4
  • 1.23e4
58.32826
  • 58.32826
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
1.27e4
  • 1.27e4
57.10567
  • 57.10567
AEIR
  • AEIR
UBERON:0003923dorsal pancreatic bud
  • ZFS:0000029Pharyngula:Prim-5
1.29e4
  • 1.29e4
56.24156
  • 56.24156
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000025Segmentation:10-13 somites
1.30e4
  • 1.30e4
  • 1.31e4
  • 1.35e4
55.96620
  • 55.96620
  • 55.86038
  • 54.51503
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
1.32e4
  • 1.32e4
  • 1.35e4
55.23779
  • 55.23779
  • 54.53193
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.18765
  • 52.18765
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.25665
  • 51.25665
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
50.82803
  • 50.82803
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.31518
  • 50.31518
AEIR
  • AEIR
UBERON:0002139subcommissural organ
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.48e4
  • 1.48e4
  • 1.48e4
50.00169
  • 50.00169
  • 50.00169
AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
49.97296
  • 49.97296
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
49.73082
  • 49.73082
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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