D. rerio Gene: cdc42se1 - ENSDARG00000023724 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000023724
Namecdc42se1
DescriptionCDC42 small effector 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9260]
OrganismDanio rerio (zebrafish)
Synonym(s)spec1, wu:fa55c04, wu:fc05d06, zgc:55642

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
95.16475
  • 95.16475
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.98e3
  • 1.98e3
93.32733
  • 93.32733
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.48e3
  • 2.48e3
91.60766
  • 91.60766
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.51e3
  • 2.51e3
91.50626
  • 91.50626
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.05e3
  • 3.05e3
89.70476
  • 89.70476
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.17e3
  • 3.17e3
  • 6.39e3
89.28811
  • 89.28811
  • 78.40713
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.20e3
  • 3.20e3
89.20116
  • 89.20116
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.26e3
  • 3.26e3
  • 1.62e4
89.00174
  • 89.00174
  • 45.28814
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.24e3
  • 4.24e3
85.65900
  • 85.65900
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
4.53e3
  • 4.53e3
  • 6.65e3
  • 6.74e3
  • 6.81e3
  • 7.69e3
  • 8.08e3
  • 8.57e3
  • 9.98e3
  • 1.08e4
  • 1.20e4
84.70248
  • 84.70248
  • 77.53884
  • 77.23624
  • 76.97865
  • 74.00703
  • 72.67896
  • 71.04848
  • 66.28158
  • 63.40838
  • 59.57433
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.77e3
  • 4.77e3
83.89806
  • 83.89806
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
4.93e3
  • 4.93e3
  • 6.48e3
  • 6.58e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.91e3
  • 6.97e3
  • 7.40e3
  • 7.40e3
  • 7.84e3
  • 8.88e3
  • 8.88e3
  • 1.28e4
  • 1.32e4
  • 1.44e4
  • 1.47e4
  • 1.70e4
  • 1.76e4
  • 1.76e4
  • 1.76e4
  • 1.77e4
  • 1.77e4
  • 1.77e4
  • 1.78e4
  • 1.80e4
  • 1.82e4
  • 1.82e4
  • 1.83e4
83.32826
  • 83.32826
  • 78.11654
  • 77.76763
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 76.65821
  • 76.46123
  • 74.99322
  • 74.99322
  • 73.51758
  • 69.98817
  • 69.98817
  • 56.58126
  • 55.22020
  • 51.41348
  • 50.24552
  • 42.61435
  • 40.46607
  • 40.40326
  • 40.39824
  • 40.27309
  • 40.23240
  • 40.05343
  • 39.71987
  • 39.26928
  • 38.58458
  • 38.48958
  • 38.30396
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.95e3
  • 4.95e3
83.27954
  • 83.27954
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.75e3
  • 5.75e3
80.57139
  • 80.57139
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.83e3
  • 5.83e3
80.30859
  • 80.30859
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.91e3
  • 5.91e3
80.04472
  • 80.04472
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.30e3
  • 6.30e3
78.70260
  • 78.70260
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
6.50e3
  • 6.50e3
  • 8.62e3
  • 9.40e3
78.02646
  • 78.02646
  • 70.85238
  • 68.24440
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
6.92e3
  • 6.92e3
  • 7.40e3
  • 7.58e3
  • 8.04e3
  • 1.08e4
76.60352
  • 76.60352
  • 74.98210
  • 74.37112
  • 72.82335
  • 63.64795
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.48e3
  • 9.48e3
67.95052
  • 67.95052
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.55e3
  • 9.55e3
67.71627
  • 67.71627
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.95e3
  • 9.95e3
66.37151
  • 66.37151
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
  • 1.35e4
63.96408
  • 63.96408
  • 54.22663
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.08e4
  • 1.08e4
63.66181
  • 63.66181
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.10e4
  • 1.10e4
62.79118
  • 62.79118
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.10e4
  • 1.10e4
  • 1.36e4
  • 1.67e4
62.67031
  • 62.67031
  • 53.94224
  • 43.46766
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.14e4
  • 1.14e4
  • 1.22e4
61.51547
  • 61.51547
  • 58.66426
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAL929190, AY423037, BC044443
EnsemblENSDARG00000023724 (cdc42se1)
Uniprot/SWISSPROTC42S1_DANRE, Q6TEL3
ZFINZDB-GENE-030131-9260 (cdc42se1)

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