D. rerio Gene: cdc42se1 - ENSDARG00000023724 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000023724
Namecdc42se1
DescriptionCDC42 small effector 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9260]
OrganismDanio rerio (zebrafish)
Synonym(s)spec1, wu:fa55c04, wu:fc05d06, zgc:55642

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.31e3
  • 1.31e3
95.63162
  • 95.63162
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.41e3
  • 1.41e3
  • 1.80e3
  • 6.55e3
  • 8.69e3
  • 9.46e3
95.29689
  • 95.29689
  • 93.96414
  • 78.07397
  • 70.91541
  • 68.31306
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
95.19995
  • 95.19995
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.87e3
  • 1.87e3
93.75739
  • 93.75739
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.93e3
  • 1.93e3
  • 2.46e3
93.52450
  • 93.52450
  • 91.77799
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.99e3
  • 1.99e3
93.34176
  • 93.34176
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.35e3
  • 2.35e3
92.12738
  • 92.12738
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.48e3
  • 2.48e3
91.68536
  • 91.68536
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.51e3
  • 2.51e3
91.58490
  • 91.58490
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.72e3
  • 2.72e3
90.89425
  • 90.89425
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.05e3
  • 3.05e3
89.80009
  • 89.80009
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.19e3
  • 3.19e3
  • 6.44e3
89.31125
  • 89.31125
  • 78.45381
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.26e3
  • 3.26e3
  • 1.62e4
89.10357
  • 89.10357
  • 45.78669
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
3.30e3
  • 3.30e3
  • 6.97e3
  • 7.02e3
  • 7.64e3
  • 8.10e3
  • 1.08e4
88.93641
  • 88.93641
  • 76.65412
  • 76.50069
  • 74.42651
  • 72.88209
  • 63.72655
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.14e3
  • 4.14e3
86.12926
  • 86.12926
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.24e3
  • 4.24e3
85.79178
  • 85.79178
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.77e3
  • 4.77e3
84.04715
  • 84.04715
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
4.98e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
  • 1.29e4
  • 1.33e4
  • 1.45e4
  • 1.49e4
  • 1.71e4
  • 1.77e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
  • 1.81e4
  • 1.83e4
  • 1.83e4
  • 1.84e4
83.32833
  • 83.32833
  • 78.11663
  • 77.76774
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 77.26769
  • 76.65831
  • 76.46134
  • 74.99330
  • 74.99330
  • 73.51770
  • 69.98828
  • 69.98828
  • 56.67512
  • 55.31701
  • 51.41533
  • 50.24726
  • 42.73847
  • 40.59478
  • 40.53213
  • 40.52711
  • 40.40224
  • 40.36165
  • 40.18310
  • 39.85025
  • 39.40060
  • 38.71744
  • 38.62261
  • 38.43740
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.99e3
  • 4.99e3
83.29173
  • 83.29173
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.83e3
  • 5.83e3
80.49091
  • 80.49091
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.95e3
  • 5.95e3
80.08787
  • 80.08787
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.30e3
  • 6.30e3
78.89964
  • 78.89964
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
6.35e3
  • 6.35e3
  • 6.69e3
  • 6.74e3
  • 6.82e3
  • 7.75e3
  • 8.14e3
  • 8.58e3
  • 9.98e3
  • 1.09e4
  • 1.20e4
78.72458
  • 78.72458
  • 77.58742
  • 77.44701
  • 77.14962
  • 74.06322
  • 72.73807
  • 71.25600
  • 66.59348
  • 63.48753
  • 59.66176
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.55e3
  • 9.55e3
68.01982
  • 68.01982
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.62e3
  • 9.62e3
67.78609
  • 67.78609
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
9.62e3
  • 9.62e3
  • 1.37e4
  • 1.38e4
67.77507
  • 67.77507
  • 54.04186
  • 53.64474
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.00e4
  • 1.00e4
66.44423
  • 66.44423
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
  • 1.11e4
64.04203
  • 64.04203
  • 62.88732
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.08e4
  • 1.08e4
63.99829
  • 63.99829
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.11e4
  • 1.11e4
62.87165
  • 62.87165
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.15e4
  • 1.15e4
  • 1.23e4
61.59870
  • 61.59870
  • 58.75368
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAL929190, AY423037, BC044443
EnsemblENSDARG00000023724 (cdc42se1)
Uniprot/SWISSPROTC42S1_DANRE, Q6TEL3
ZFINZDB-GENE-030131-9260 (cdc42se1)

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