D. rerio Gene: si:ch73-362m14.4 - ENSDARG00000023940 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000023940
Namesi:ch73-362m14.4
Descriptionsi:ch73-362m14.4 [Source:ZFIN;Acc:ZDB-GENE-120215-30]
OrganismDanio rerio (zebrafish)
Orthologs(s)5 orthologs
Paralog(s)9 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
4.66e3
  • 4.66e3
84.40
  • 84.40
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
9.30e3
  • 9.30e3
  • 1.13e4
  • 1.79e4
  • 1.93e4
  • 1.94e4
68.86
  • 68.86
  • 62.12
  • 39.94
  • 35.50
  • 35.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
9.87e3
  • 9.87e3
  • 1.40e4
66.96
  • 66.96
  • 53.01
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.05e4
  • 1.05e4
64.84
  • 64.84
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.25e4
  • 1.25e4
  • 1.61e4
58.24
  • 58.24
  • 45.98
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.82e4
  • 1.82e4
39.14
  • 39.14
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.89
  • 38.89
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.27
  • 37.27
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.51
  • 29.51
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
27.08
  • 27.08
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria5 species5 genesCompare expression

Orthology information comes from OMA : ENSDARG00000023940.

Paralogs (same species)

Cross-references

EnsemblENSDARG00000023940 (si:ch73-362m14.4)
ZFINZDB-GENE-120215-30 (si:ch73-362m14.4)
EMBLCU856285, FP102106
Uniprot/SPTREMBLI3ITM8, I3ITM8_DANRE

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