D. rerio Gene: tpm4a - ENSDARG00000023963 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000023963
Nametpm4a
Descriptiontropomyosin 4a [Source:ZFIN;Acc:ZDB-GENE-040426-2185]
OrganismDanio rerio (zebrafish)
Synonym(s)tpm4, tpm4 {eco:0000313|embl:aah53144.1,gn eco:0000313|zfin:zdb-gene-040426-2185}, wu:fb06e07, zgc:103436, zgc:63909
Orthologs(s)26 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
28.4
  • 28.4
  • 388
  • 3.93e3
  • 9.96e3
  • 1.07e4
  • 1.15e4
99.91
  • 99.91
  • 98.70
  • 86.84
  • 66.65
  • 64.28
  • 61.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
114
  • 114
99.62
  • 99.62
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
421
  • 421
98.59
  • 98.59
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
498
  • 498
98.34
  • 98.34
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
514
  • 514
  • 617
  • 781
  • 828
  • 959
  • 1.23e3
  • 1.51e3
  • 1.77e3
  • 1.85e3
  • 2.16e3
98.28
  • 98.28
  • 97.94
  • 97.39
  • 97.23
  • 96.79
  • 95.88
  • 94.94
  • 94.07
  • 93.82
  • 92.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
572
  • 572
  • 2.96e3
  • 1.49e4
98.09
  • 98.09
  • 90.10
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.08e3
  • 1.08e3
96.38
  • 96.38
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.10e3
  • 1.10e3
96.31
  • 96.31
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.23e3
  • 1.23e3
95.90
  • 95.90
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.41e3
  • 1.41e3
  • 5.02e3
95.29
  • 95.29
  • 83.21
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.45e3
  • 1.45e3
  • 1.78e3
  • 1.93e3
95.15
  • 95.15
  • 94.05
  • 93.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.49e3
  • 1.49e3
95.01
  • 95.01
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.79e3
  • 1.79e3
  • 2.52e3
93.99
  • 93.99
  • 91.58
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
1.81e3
  • 1.81e3
  • 1.95e3
  • 2.15e3
  • 2.33e3
  • 2.46e3
  • 3.00e3
  • 4.18e3
  • 6.08e3
  • 6.87e3
  • 8.89e3
  • 9.96e3
  • 1.03e4
  • 1.14e4
  • 1.14e4
  • 1.14e4
  • 1.33e4
  • 1.47e4
  • 1.48e4
  • 1.49e4
  • 1.49e4
93.94
  • 93.94
  • 93.49
  • 92.79
  • 92.21
  • 91.76
  • 89.96
  • 86.00
  • 79.63
  • 76.99
  • 70.22
  • 66.65
  • 65.61
  • 61.92
  • 61.84
  • 61.75
  • 55.37
  • 50.90
  • 50.61
  • 50.25
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.91e3
  • 1.91e3
93.60
  • 93.60
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.14e3
  • 2.14e3
92.83
  • 92.83
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.26e3
  • 2.26e3
92.43
  • 92.43
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.44e3
  • 2.44e3
91.82
  • 91.82
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.08e3
  • 3.08e3
89.71
  • 89.71
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
89.09
  • 89.09
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
3.40e3
  • 3.40e3
  • 8.66e3
  • 9.00e3
  • 9.57e3
  • 9.78e3
  • 1.42e4
88.62
  • 88.62
  • 71.00
  • 69.85
  • 67.94
  • 67.24
  • 52.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.44e3
  • 3.44e3
88.49
  • 88.49
AEIR
  • AEIR
UBERON:0001133cardiac muscle tissue
  • ZFS:0000033Hatching:Long-pec
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.28e3
  • 5.28e3
82.32
  • 82.32
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.52e3
  • 5.52e3
81.51
  • 81.51
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.76e3
  • 5.76e3
80.72
  • 80.72
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.18e3
  • 6.18e3
79.30
  • 79.30
AEIR
  • AEIR
UBERON:2005010mid cerebral vein
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
  • 8.22e3
  • 8.30e3
  • 9.13e3
  • 9.96e3
  • 1.02e4
  • 1.05e4
  • 1.16e4
  • 1.49e4
75.00
  • 75.00
  • 72.48
  • 72.21
  • 69.43
  • 66.65
  • 65.77
  • 64.98
  • 61.09
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
74.99
  • 74.99
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 1.08e4
74.99
  • 74.99
  • 63.87
AEIR
  • AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.04e3
  • 8.04e3
  • 8.40e3
  • 8.71e3
  • 8.71e3
  • 9.19e3
  • 9.96e3
  • 1.05e4
73.07
  • 73.07
  • 71.86
  • 70.82
  • 70.82
  • 69.22
  • 66.66
  • 64.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
8.51e3
  • 8.51e3
  • 9.25e3
  • 1.29e4
71.51
  • 71.51
  • 69.04
  • 56.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 9.13e3
  • 9.19e3
69.99
  • 69.99
  • 69.43
  • 69.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
8.96e3
  • 8.96e3
  • 8.96e3
  • 8.96e3
  • 9.96e3
  • 1.05e4
  • 1.05e4
  • 1.07e4
69.99
  • 69.99
  • 69.99
  • 69.99
  • 66.65
  • 64.99
  • 64.99
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • ZFS:0000037Larval:Day 5
9.33e3
  • 9.33e3
68.74
  • 68.74
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
9.56e3
  • 9.56e3
67.98
  • 67.98
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0003084heart primordium
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
1.05e4
  • 1.05e4
  • 1.31e4
64.69
  • 64.69
  • 56.24
AEIR
  • AEIR
  • AEIR
UBERON:0005498primitive heart tube
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
59.98
  • 59.98
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.23e4
  • 1.23e4
  • 1.35e4
58.79
  • 58.79
  • 54.72
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.24e4
  • 1.24e4
58.41
  • 58.41
AEIR
  • AEIR
UBERON:0003081lateral plate mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.33e4
  • 1.33e4
  • 1.49e4
55.55
  • 55.55
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.26
  • 51.26
AEIR
  • AEIR
UBERON:2000414presumptive cephalic mesoderm
  • ZFS:0000023Segmentation:1-4 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2005084metencephalic artery
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species18 genesCompare expression
Bilateria24 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000023963.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata4 genesCompare expression
Deuterostomia5 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000023963.

Cross-references

EnsemblENSDARG00000023963 (tpm4a)
ZFINZDB-GENE-040426-2185 (tpm4a)
EMBLBC053144, BX322595, CABZ01035470, CABZ01090042
Uniprot/SPTREMBLF1QKG7, F1QKG7_DANRE, F1R412, F1R412_DANRE, Q1LXM1, Q1LXM1_DANRE, Q1LXM2, Q1LXM2_DANRE, Q7T3F0, Q7T3F0_DANRE

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