D. rerio Gene: pef1 - ENSDARG00000023989 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000023989
Namepef1
Descriptionpenta-EF-hand domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040801-259]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:100787

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.11e3
  • 1.11e3
96.23815
  • 96.23815
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.32e3
  • 2.32e3
92.17549
  • 92.17549
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.80e3
  • 2.80e3
90.53960
  • 90.53960
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.13e3
  • 3.13e3
89.41392
  • 89.41392
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.35e3
  • 3.35e3
88.69079
  • 88.69079
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.41e3
  • 3.41e3
88.46433
  • 88.46433
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.94e3
  • 3.94e3
  • 7.93e3
86.68312
  • 86.68312
  • 73.20372
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.38e3
  • 4.38e3
85.19189
  • 85.19189
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.41e3
  • 4.41e3
  • 4.88e3
  • 5.26e3
  • 6.99e3
  • 1.08e4
  • 1.17e4
  • 1.19e4
  • 1.19e4
  • 1.23e4
  • 1.33e4
85.09793
  • 85.09793
  • 83.51951
  • 82.22745
  • 76.37564
  • 63.58723
  • 60.56188
  • 59.87471
  • 59.82147
  • 58.28229
  • 55.20954
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.09e3
  • 5.09e3
82.80635
  • 82.80635
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.33e3
  • 5.33e3
81.99288
  • 81.99288
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.83e3
  • 5.83e3
80.30859
  • 80.30859
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000104life cycle
6.34e3
  • 6.34e3
  • 6.34e3
  • 6.34e3
  • 6.58e3
  • 6.83e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.89e3
  • 8.46e3
  • 8.46e3
  • 8.63e3
  • 8.71e3
  • 8.71e3
  • 8.88e3
  • 8.88e3
  • 9.05e3
  • 9.05e3
  • 9.05e3
  • 9.62e3
  • 9.87e3
  • 9.87e3
  • 1.48e4
78.56975
  • 78.56975
  • 78.56975
  • 78.56975
  • 77.77439
  • 76.91633
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 73.32320
  • 71.42518
  • 71.41166
  • 70.82487
  • 70.57472
  • 70.57472
  • 69.98817
  • 69.98310
  • 69.42923
  • 69.42923
  • 69.42923
  • 67.48142
  • 66.65990
  • 66.65314
  • 49.96620
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
6.58e3
  • 6.58e3
77.75835
  • 77.75835
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.92e3
  • 7.92e3
73.24405
  • 73.24405
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.25e3
  • 8.25e3
72.11904
  • 72.11904
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
8.83e3
  • 8.83e3
  • 9.10e3
  • 1.06e4
  • 1.06e4
  • 1.33e4
70.16190
  • 70.16190
  • 69.24320
  • 64.32853
  • 64.26008
  • 54.88314
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000049segmentation
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
8.94e3
  • 8.94e3
  • 1.07e4
  • 1.10e4
  • 1.12e4
  • 1.12e4
  • 1.18e4
  • 1.22e4
  • 1.27e4
  • 1.29e4
  • 1.33e4
  • 1.34e4
  • 1.35e4
  • 1.37e4
  • 1.40e4
  • 1.43e4
  • 1.45e4
  • 1.45e4
  • 1.48e4
69.77377
  • 69.77377
  • 63.77414
  • 62.78289
  • 62.12011
  • 62.00029
  • 60.28683
  • 58.75766
  • 57.15797
  • 56.27529
  • 55.07539
  • 54.82514
  • 54.25962
  • 53.56089
  • 52.57237
  • 51.51349
  • 51.11845
  • 51.00857
  • 49.91719
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.77e3
  • 9.77e3
66.96879
  • 66.96879
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
9.77e3
  • 9.77e3
  • 1.21e4
  • 1.45e4
66.96797
  • 66.96797
  • 58.94197
  • 50.85659
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.55387
  • 65.55387
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
1.05e4
  • 1.05e4
  • 1.16e4
  • 1.32e4
64.42357
  • 64.42357
  • 60.92951
  • 55.53036
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.08e4
  • 1.08e4
63.46146
  • 63.46146
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.09e4
  • 1.09e4
63.08794
  • 63.08794
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.14e4
  • 1.14e4
  • 1.23e4
61.60976
  • 61.60976
  • 58.47445
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.18e4
  • 1.18e4
60.04655
  • 60.04655
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.22e4
  • 1.22e4
  • 1.23e4
58.75328
  • 58.75328
  • 58.29613
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.32e4
  • 1.32e4
  • 1.54e4
  • 1.69e4
55.29184
  • 55.29184
  • 48.01703
  • 42.83038
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
  • 1.48e4
55.16372
  • 55.16372
  • 49.93916
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC078183, CR318592
EnsemblENSDARG00000023989 (pef1)
Uniprot/SWISSPROTPEF1_DANRE, Q6DC93
ZFINZDB-GENE-040801-259 (pef1)

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