D. rerio Gene: mamdc1 - ENSDARG00000024017 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000024017
Namemamdc1
DescriptionMAM domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030616-360]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dz209d10.1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
3.81e3
  • 3.81e3
  • 1.43e4
87.26
  • 87.26
  • 52.28
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
6.22e3
  • 6.22e3
  • 1.59e4
79.16
  • 79.16
  • 46.90
AEIR
  • AEIR
  • AEIR
UBERON:0001715oculomotor nuclear complex
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002633motor nucleus of trigeminal nerve
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0003011facial motor nucleus
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
7.57e3
  • 7.57e3
  • 1.01e4
  • 1.15e4
  • 1.19e4
  • 1.27e4
  • 1.45e4
  • 1.48e4
  • 1.49e4
  • 1.50e4
  • 1.50e4
74.64
  • 74.64
  • 66.16
  • 61.64
  • 60.16
  • 57.37
  • 51.33
  • 50.55
  • 50.12
  • 49.87
  • 49.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.61e3
  • 7.61e3
  • 1.01e4
74.51
  • 74.51
  • 66.22
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
1.09e4
  • 1.09e4
  • 1.47e4
  • 1.56e4
  • 1.65e4
  • 1.78e4
  • 1.81e4
  • 1.86e4
  • 1.94e4
63.37
  • 63.37
  • 50.73
  • 47.67
  • 44.79
  • 40.40
  • 39.50
  • 37.77
  • 34.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.59
  • 61.59
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.18e4
  • 1.18e4
  • 1.22e4
  • 1.37e4
  • 1.55e4
  • 1.62e4
60.33
  • 60.33
  • 59.28
  • 54.01
  • 48.18
  • 45.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.23e4
  • 1.23e4
  • 1.37e4
  • 1.44e4
58.65
  • 58.65
  • 54.22
  • 51.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.22
  • 53.22
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.44e4
  • 1.44e4
51.78
  • 51.78
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.44e4
  • 1.44e4
51.73
  • 51.73
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.87
  • 50.87
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.48e4
  • 1.48e4
50.60
  • 50.60
AEIR
  • AEIR
UBERON:0011778motor nucleus of vagal nerve
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0005000spinal cord interneuron
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002722trochlear nucleus
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.51e4
  • 1.51e4
49.32
  • 49.32
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.88
  • 48.88
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.21
  • 48.21
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.61e4
  • 1.61e4
46.06
  • 46.06
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.20
  • 44.20
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.88
  • 43.88
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.37
  • 43.37
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.75e4
  • 1.75e4
41.44
  • 41.44
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.60
  • 38.60
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.59
  • 32.59
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
29.07
  • 29.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000024017 (mamdc1)
ZFINZDB-GENE-030616-360 (mamdc1)
EMBLBX465838, BX511062
Uniprot/SPTREMBLF1RDD1, F1RDD1_DANRE, X1WFH3, X1WFH3_DANRE

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