D. rerio Gene: tmem38a - ENSDARG00000024047 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000024047
Nametmem38a
Descriptiontransmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:77831
Orthologs(s)26 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
248
  • 248
99.17
  • 99.17
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
260
  • 260
99.13
  • 99.13
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
421
  • 421
  • 476
  • 488
  • 573
  • 585
  • 644
  • 674
  • 3.23e3
  • 1.00e4
  • 1.29e4
98.59
  • 98.59
  • 98.41
  • 98.37
  • 98.08
  • 98.05
  • 97.85
  • 97.75
  • 89.17
  • 66.38
  • 56.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
475
  • 475
  • 535
  • 563
  • 657
  • 703
  • 921
  • 1.13e3
  • 9.64e3
  • 1.14e4
  • 1.25e4
  • 1.41e4
  • 1.44e4
  • 1.49e4
  • 1.53e4
  • 1.54e4
  • 1.55e4
98.41
  • 98.41
  • 98.21
  • 98.12
  • 97.80
  • 97.65
  • 96.92
  • 96.23
  • 67.71
  • 61.75
  • 58.30
  • 52.87
  • 51.88
  • 49.98
  • 48.84
  • 48.41
  • 48.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
499
  • 499
98.33
  • 98.33
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
511
  • 511
  • 543
  • 571
98.29
  • 98.29
  • 98.18
  • 98.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
545
  • 545
98.18
  • 98.18
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.26e3
  • 1.26e3
  • 3.52e3
  • 1.21e4
95.78
  • 95.78
  • 88.22
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.10e3
  • 2.10e3
92.96
  • 92.96
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.45e3
  • 2.45e3
91.80
  • 91.80
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.74e3
  • 2.74e3
  • 4.53e3
90.83
  • 90.83
  • 84.82
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.92e3
  • 3.92e3
  • 8.59e3
86.89
  • 86.89
  • 71.25
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
4.22e3
  • 4.22e3
  • 9.19e3
  • 9.39e3
  • 1.75e4
85.88
  • 85.88
  • 69.22
  • 68.57
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
4.56e3
  • 4.56e3
84.73
  • 84.73
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.75e3
  • 5.75e3
80.75
  • 80.75
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
5.97e3
  • 5.97e3
  • 1.05e4
  • 1.08e4
  • 1.12e4
  • 1.12e4
80.00
  • 80.00
  • 64.98
  • 63.76
  • 62.49
  • 62.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.24e3
  • 7.24e3
75.77
  • 75.77
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.13e3
  • 8.13e3
72.78
  • 72.78
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.20e4
  • 1.20e4
  • 1.25e4
  • 1.33e4
  • 1.34e4
  • 1.34e4
  • 1.41e4
  • 1.41e4
59.98
  • 59.98
  • 58.31
  • 55.53
  • 55.24
  • 54.97
  • 52.75
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.25e4
  • 1.25e4
  • 1.32e4
  • 1.33e4
58.31
  • 58.31
  • 55.86
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001015musculature
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
  • 1.35e4
56.68
  • 56.68
  • 54.86
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.34e4
  • 1.34e4
55.24
  • 55.24
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
1.50e4
  • 1.50e4
49.77
  • 49.77
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
46.95
  • 46.95
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.12
  • 46.12
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.75e4
  • 1.75e4
41.32
  • 41.32
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.81
  • 40.81
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.73
  • 36.73
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000024047.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000024047.

Cross-references

EnsemblENSDARG00000024047 (tmem38a)
ZFINZDB-GENE-040426-1888 (tmem38a)
EMBLBC064309
Uniprot/SWISSPROTQ6P2T0, TM38A_DANRE

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