D. rerio Gene: mcm3 - ENSDARG00000024204 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000024204
Namemcm3
Descriptionminichromosome maintenance complex component 3 [Source:ZFIN;Acc:ZDB-GENE-020419-4]
OrganismDanio rerio (zebrafish)
Synonym(s)cb32, chunp6867, mcm3 minichromosome maintenance deficient 3, wu:fa26g03

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
575
  • 575
  • 753
  • 769
  • 1.04e3
  • 1.18e3
  • 1.37e3
98.08
  • 98.08
  • 97.48
  • 97.43
  • 96.52
  • 96.04
  • 95.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
941
  • 941
  • 989
  • 1.06e3
  • 1.21e3
  • 1.25e3
  • 1.31e3
  • 1.81e3
  • 2.63e3
  • 4.52e3
  • 6.24e3
96.85
  • 96.85
  • 96.69
  • 96.46
  • 95.94
  • 95.83
  • 95.62
  • 93.94
  • 91.19
  • 84.86
  • 79.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.03e3
  • 1.03e3
96.56
  • 96.56
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.10e3
  • 1.10e3
  • 3.52e3
  • 1.21e4
96.31
  • 96.31
  • 88.23
  • 59.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.25e3
  • 1.25e3
95.80
  • 95.80
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000037Larval:Day 5
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
1.27e3
  • 1.27e3
  • 1.33e3
  • 1.36e3
  • 1.37e3
  • 1.56e3
  • 1.83e3
  • 2.08e3
  • 2.40e3
  • 3.98e3
  • 4.28e3
  • 4.67e3
  • 6.59e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.42e3
  • 8.79e3
  • 1.38e4
  • 1.45e4
  • 1.45e4
  • 1.50e4
95.77
  • 95.77
  • 95.56
  • 95.44
  • 95.41
  • 94.80
  • 93.86
  • 93.04
  • 91.96
  • 86.68
  • 85.68
  • 84.37
  • 77.93
  • 74.99
  • 74.99
  • 73.52
  • 71.81
  • 70.57
  • 53.85
  • 51.51
  • 51.42
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.46e3
  • 1.46e3
95.12
  • 95.12
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.60e3
  • 1.60e3
  • 2.57e3
  • 1.04e4
94.66
  • 94.66
  • 91.40
  • 65.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.11e3
  • 2.11e3
92.93
  • 92.93
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
2.29e3
  • 2.29e3
  • 1.34e4
  • 1.34e4
  • 1.37e4
  • 1.44e4
92.32
  • 92.32
  • 54.97
  • 54.97
  • 54.13
  • 51.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
2.39e3
  • 2.39e3
  • 1.21e4
  • 1.40e4
92.01
  • 92.01
  • 59.59
  • 52.97
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.60e3
  • 2.60e3
91.29
  • 91.29
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.41e3
  • 3.41e3
  • 1.22e4
  • 1.53e4
88.59
  • 88.59
  • 59.08
  • 48.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000098proliferative region
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
4.48e3
  • 4.48e3
  • 6.64e3
  • 6.64e3
  • 6.64e3
  • 6.64e3
  • 7.47e3
  • 7.47e3
  • 8.30e3
  • 8.30e3
  • 8.30e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 8.96e3
85.00
  • 85.00
  • 77.77
  • 77.77
  • 77.77
  • 77.77
  • 75.00
  • 74.99
  • 72.22
  • 72.22
  • 72.22
  • 71.43
  • 71.43
  • 71.43
  • 71.43
  • 71.43
  • 71.43
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.63e3
  • 4.63e3
84.50
  • 84.50
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.97e3
  • 4.97e3
  • 5.14e3
  • 6.41e3
83.36
  • 83.36
  • 82.81
  • 78.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.80e3
  • 5.80e3
80.57
  • 80.57
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.90e3
  • 5.90e3
  • 6.17e3
80.26
  • 80.26
  • 79.36
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.14e3
  • 6.14e3
  • 1.44e4
79.43
  • 79.43
  • 51.92
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.14e3
  • 8.14e3
72.74
  • 72.74
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.79e3
  • 8.79e3
70.58
  • 70.58
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.97
  • 62.97
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.07
  • 62.07
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.17e4
  • 1.17e4
60.73
  • 60.73
AEIR
  • AEIR
UBERON:0003065ciliary marginal zone
  • ZFS:0000033Hatching:Long-pec
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
1.20e4
  • 1.20e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
59.98
  • 59.98
  • 49.98
  • 49.98
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.20e4
  • 1.20e4
59.75
  • 59.75
AEIR
  • AEIR
UBERON:0000178blood
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.28e4
  • 1.28e4
  • 1.28e4
  • 1.31e4
  • 1.37e4
  • 1.37e4
57.13
  • 57.13
  • 57.13
  • 56.23
  • 54.15
  • 54.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.07
  • 57.07
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.34e4
  • 1.34e4
  • 1.39e4
  • 1.41e4
  • 1.41e4
  • 1.49e4
  • 1.49e4
55.24
  • 55.24
  • 53.55
  • 52.92
  • 52.92
  • 49.98
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.58
  • 54.58
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.21
  • 53.21
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.44
  • 52.44
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.33
  • 49.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX279523
EnsemblENSDARG00000024204 (mcm3)
Uniprot/SPTREMBLQ5RIC5, Q5RIC5_DANRE
ZFINZDB-GENE-020419-4 (mcm3)

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