D. rerio Gene: pcbp4 - ENSDARG00000024276 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000024276
Namepcbp4
Descriptionpoly(rC) binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2122]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fc68f03, zgc:65870, zgc:77347
Orthologs(s)16 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.28e3
  • 1.28e3
  • 1.67e3
  • 1.21e4
95.72
  • 95.72
  • 94.41
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.74e3
  • 1.74e3
94.17
  • 94.17
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.58e3
  • 2.58e3
91.36
  • 91.36
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
3.27e3
  • 3.27e3
  • 4.30e3
  • 4.37e3
  • 6.27e3
  • 7.11e3
89.05
  • 89.05
  • 85.60
  • 85.36
  • 78.99
  • 76.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.53e3
  • 3.53e3
  • 4.80e3
88.17
  • 88.17
  • 83.93
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
4.08e3
  • 4.08e3
86.35
  • 86.35
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.83e3
  • 4.83e3
83.84
  • 83.84
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.21e3
  • 5.21e3
82.57
  • 82.57
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
6.24e3
  • 6.24e3
  • 6.30e3
79.09
  • 79.09
  • 78.92
AEIR
  • AEIR
  • AEIR
UBERON:2000120lateral line ganglion
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
8.30e3
  • 8.30e3
  • 8.71e3
72.22
  • 72.22
  • 70.82
AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
8.54e3
  • 8.54e3
  • 8.96e3
  • 9.60e3
71.42
  • 71.42
  • 69.99
  • 67.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.39e3
  • 9.39e3
68.56
  • 68.56
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.94
  • 63.94
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.24
  • 58.24
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.30
  • 57.30
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.32e4
  • 1.32e4
55.82
  • 55.82
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.57
  • 55.57
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.34e4
  • 1.34e4
55.04
  • 55.04
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.40e4
  • 1.40e4
  • 1.57e4
53.02
  • 53.02
  • 47.27
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
46.98
  • 46.98
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.03
  • 46.03
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.66e4
  • 1.66e4
44.56
  • 44.56
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.38
  • 43.38
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.31
  • 43.31
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.24
  • 43.24
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.04
  • 39.04
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000024276.

Cross-references

EnsemblENSDARG00000024276 (pcbp4)
ZFINZDB-GENE-040426-2122 (pcbp4)
EMBLAL954840, CABZ01011786, CABZ01011787, CABZ01011788, CABZ01011789, CABZ01011790, CU462880, CU469461, CU856621
Uniprot/SPTREMBLA0A0J9YJ03, A0A0J9YJ03_DANRE, F1Q8M8, F1Q8M8_DANRE, F8W3L2, F8W3L2_DANRE, F8W4X8, F8W4X8_DANRE, Q7SZN9, Q7SZN9_DANRE

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