D. rerio Gene: trap1 - ENSDARG00000024317 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000024317
Nametrap1
DescriptionTNF receptor-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4257]
OrganismDanio rerio (zebrafish)
Synonym(s)fc85a11, wu:fc85a11

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
2.69e3
  • 2.69e3
  • 3.27e3
  • 4.45e3
  • 4.85e3
  • 6.82e3
  • 7.13e3
  • 7.21e3
  • 7.71e3
  • 7.96e3
  • 1.16e4
90.99
  • 90.99
  • 89.05
  • 85.10
  • 83.76
  • 77.16
  • 76.11
  • 75.86
  • 74.17
  • 73.36
  • 61.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
2.84e3
  • 2.84e3
  • 4.28e3
  • 4.93e3
  • 7.85e3
  • 8.53e3
90.50
  • 90.50
  • 85.68
  • 83.48
  • 73.70
  • 71.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
2.96e3
  • 2.96e3
  • 3.53e3
  • 4.41e3
  • 1.25e4
90.10
  • 90.10
  • 88.17
  • 85.24
  • 58.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
2.98e3
  • 2.98e3
  • 3.77e3
  • 5.13e3
  • 5.27e3
  • 5.44e3
  • 5.45e3
90.04
  • 90.04
  • 87.37
  • 82.81
  • 82.36
  • 81.79
  • 81.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.13e3
  • 3.13e3
89.53
  • 89.53
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.19e3
  • 3.19e3
  • 3.49e3
89.32
  • 89.32
  • 88.31
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.42e3
  • 3.42e3
88.55
  • 88.55
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.46e3
  • 3.46e3
88.41
  • 88.41
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.68e3
  • 3.68e3
87.67
  • 87.67
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.83e3
  • 3.83e3
87.19
  • 87.19
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.88e3
  • 3.88e3
87.03
  • 87.03
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.19e3
  • 4.19e3
85.99
  • 85.99
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.66e3
  • 4.66e3
84.38
  • 84.38
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.97e3
  • 4.97e3
83.38
  • 83.38
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
5.02e3
  • 5.02e3
  • 5.78e3
  • 5.98e3
83.19
  • 83.19
  • 80.66
  • 79.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.07e3
  • 5.07e3
83.03
  • 83.03
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.12e3
  • 5.12e3
82.86
  • 82.86
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
5.32e3
  • 5.32e3
  • 5.44e3
82.18
  • 82.18
  • 81.78
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.34e3
  • 5.34e3
82.13
  • 82.13
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.43e3
  • 5.43e3
81.83
  • 81.83
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
5.48e3
  • 5.48e3
  • 5.72e3
  • 5.78e3
  • 5.85e3
  • 5.86e3
  • 5.93e3
  • 6.05e3
  • 6.07e3
  • 6.21e3
  • 6.25e3
  • 6.62e3
  • 6.66e3
  • 8.48e3
  • 8.59e3
  • 1.47e4
  • 1.50e4
81.64
  • 81.64
  • 80.84
  • 80.66
  • 80.43
  • 80.40
  • 80.16
  • 79.76
  • 79.69
  • 79.20
  • 79.08
  • 77.82
  • 77.69
  • 71.60
  • 71.23
  • 50.90
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.94e3
  • 5.94e3
80.11
  • 80.11
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.16e3
  • 6.16e3
79.38
  • 79.38
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.24e3
  • 6.24e3
79.12
  • 79.12
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.39e3
  • 6.39e3
78.62
  • 78.62
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.62e3
  • 6.62e3
77.85
  • 77.85
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.73e3
  • 6.73e3
77.46
  • 77.46
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.96e3
  • 6.96e3
  • 9.66e3
76.70
  • 76.70
  • 67.65
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.54e3
  • 7.54e3
74.74
  • 74.74
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.56e3
  • 7.56e3
74.68
  • 74.68
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.04e3
  • 8.04e3
73.08
  • 73.08
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.29e3
  • 8.29e3
72.23
  • 72.23
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
8.36e3
  • 8.36e3
  • 8.65e3
72.01
  • 72.01
  • 71.02
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLCR846080
EnsemblENSDARG00000024317 (trap1)
Uniprot/SPTREMBLF1Q9X9, F1Q9X9_DANRE
ZFINZDB-GENE-030131-4257 (trap1)

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