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D. rerio Gene: col4a3bpa - ENSDARG00000024325 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000024325
Namecol4a3bpa
Descriptioncollagen, type IV, alpha 3 (Goodpasture antigen) binding protein a [Source:ZFIN;Acc:ZDB-GENE-080724-10]
OrganismDanio rerio (zebrafish)
Synonym(s)col4a3bp, gpbp, gpbpδ26, wu:fc37f11, zgc:92147
Orthologs(s)7 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.32e3
  • 2.32e3
92.22
  • 92.22
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.60e3
  • 2.60e3
91.29
  • 91.29
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.93e3
  • 2.93e3
90.18
  • 90.18
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
2.98e3
  • 2.98e3
  • 3.72e3
  • 6.87e3
  • 7.37e3
  • 8.52e3
  • 1.04e4
90.01
  • 90.01
  • 87.53
  • 77.01
  • 75.33
  • 71.48
  • 65.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.27e3
  • 3.27e3
  • 1.45e4
89.05
  • 89.05
  • 51.46
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.82e3
  • 3.82e3
87.20
  • 87.20
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
3.88e3
  • 3.88e3
  • 4.25e3
  • 9.48e3
  • 9.84e3
  • 1.00e4
87.01
  • 87.01
  • 85.78
  • 68.26
  • 67.06
  • 66.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.06e3
  • 4.06e3
86.40
  • 86.40
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.35e3
  • 4.35e3
85.44
  • 85.44
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.08e3
  • 5.08e3
83.00
  • 83.00
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
5.30e3
  • 5.30e3
  • 5.70e3
  • 7.19e3
  • 8.82e3
  • 1.00e4
  • 1.05e4
  • 1.17e4
  • 1.17e4
  • 1.20e4
82.25
  • 82.25
  • 80.90
  • 75.92
  • 70.48
  • 66.46
  • 64.83
  • 60.80
  • 60.67
  • 59.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.16e3
  • 6.16e3
79.38
  • 79.38
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.31e3
  • 6.31e3
78.86
  • 78.86
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.85e3
  • 6.85e3
77.08
  • 77.08
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.34e3
  • 7.34e3
75.44
  • 75.44
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.52e3
  • 7.52e3
74.83
  • 74.83
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
8.59e3
  • 8.59e3
71.25
  • 71.25
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
8.71e3
  • 8.71e3
  • 8.81e3
  • 9.20e3
  • 9.29e3
  • 9.39e3
  • 1.02e4
  • 1.17e4
  • 1.27e4
  • 1.34e4
  • 1.42e4
  • 1.45e4
  • 1.46e4
  • 1.58e4
70.85
  • 70.85
  • 70.49
  • 69.19
  • 68.88
  • 68.58
  • 65.86
  • 60.79
  • 57.51
  • 55.19
  • 52.61
  • 51.50
  • 51.28
  • 46.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.41
  • 66.41
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.03
  • 66.03
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.57
  • 64.57
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.10e4
  • 1.10e4
  • 1.30e4
  • 1.67e4
63.05
  • 63.05
  • 56.47
  • 44.18
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.11e4
  • 1.11e4
62.90
  • 62.90
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
  • 1.20e4
60.50
  • 60.50
  • 59.76
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.20e4
  • 1.20e4
59.81
  • 59.81
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.21e4
  • 1.21e4
  • 1.23e4
59.36
  • 59.36
  • 58.65
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.26e4
  • 1.26e4
  • 1.44e4
57.90
  • 57.90
  • 51.94
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.31
  • 57.31
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.33e4
  • 1.33e4
55.63
  • 55.63
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.40e4
  • 1.40e4
53.25
  • 53.25
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.59e4
  • 1.59e4
46.68
  • 46.68
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Orthology information comes from OMA : ENSDARG00000024325.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000024325.

Cross-references

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