D. rerio Gene: col9a2 - ENSDARG00000024492 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000024492
Namecol9a2
Descriptionprocollagen, type IX, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9786]
OrganismDanio rerio (zebrafish)
Synonym(s)cb343, colixa2, sb:cb343, wu:fa12h02, wu:fc93e05, zgc:100808
Orthologs(s)18 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
562
  • 562
  • 678
  • 777
98.12
  • 98.12
  • 97.73
  • 97.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
727
  • 727
  • 1.12e3
  • 1.66e3
  • 2.07e3
  • 2.13e3
  • 2.39e3
  • 2.89e3
  • 3.85e3
  • 8.94e3
  • 1.22e4
  • 1.37e4
  • 1.46e4
  • 1.47e4
  • 1.50e4
97.57
  • 97.57
  • 96.24
  • 94.44
  • 93.06
  • 92.86
  • 92.00
  • 90.33
  • 87.12
  • 70.05
  • 59.29
  • 54.18
  • 51.01
  • 50.90
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
734
  • 734
  • 878
  • 880
  • 1.15e3
  • 1.34e3
  • 1.72e3
  • 2.05e3
  • 3.44e3
  • 8.27e3
  • 1.17e4
97.54
  • 97.54
  • 97.06
  • 97.06
  • 96.16
  • 95.51
  • 94.25
  • 93.15
  • 88.48
  • 72.33
  • 60.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.11e3
  • 1.11e3
96.28
  • 96.28
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.08e3
  • 2.08e3
93.05
  • 93.05
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000024Segmentation:5-9 somites
2.49e3
  • 2.49e3
  • 2.99e3
  • 3.52e3
  • 4.60e3
  • 4.67e3
  • 5.97e3
  • 6.58e3
  • 9.96e3
  • 1.09e4
91.67
  • 91.67
  • 90.00
  • 88.23
  • 84.61
  • 84.37
  • 80.00
  • 77.98
  • 66.66
  • 63.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
3.21e3
  • 3.21e3
  • 1.12e4
  • 1.49e4
  • 1.63e4
89.27
  • 89.27
  • 62.50
  • 50.00
  • 45.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.01e3
  • 4.01e3
86.58
  • 86.58
AEIR
  • AEIR
UBERON:0003058hypochord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
4.27e3
  • 4.27e3
  • 4.60e3
  • 4.98e3
  • 6.64e3
  • 7.47e3
  • 1.05e4
  • 1.28e4
  • 1.28e4
85.71
  • 85.71
  • 84.61
  • 83.33
  • 77.77
  • 75.00
  • 64.99
  • 57.14
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006904head mesenchyme from mesoderm
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
4.98e3
  • 4.98e3
  • 7.47e3
  • 1.49e4
83.33
  • 83.33
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.29e3
  • 5.29e3
  • 1.69e4
82.30
  • 82.30
  • 43.28
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.11e3
  • 6.11e3
79.55
  • 79.55
AEIR
  • AEIR
UBERON:0005410cartilaginous otic capsule
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 7.47e3
75.00
  • 75.00
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
7.53e3
  • 7.53e3
  • 7.73e3
  • 8.60e3
  • 1.17e4
74.78
  • 74.78
  • 74.11
  • 71.19
  • 60.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.30e3
  • 8.30e3
  • 8.30e3
  • 8.96e3
  • 9.34e3
  • 9.96e3
  • 1.03e4
  • 1.03e4
  • 1.10e4
  • 1.12e4
  • 1.12e4
  • 1.19e4
72.22
  • 72.22
  • 72.22
  • 69.99
  • 68.74
  • 66.66
  • 65.37
  • 65.37
  • 63.32
  • 62.49
  • 62.49
  • 59.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
8.96e3
  • 8.96e3
  • 8.96e3
  • 9.34e3
  • 1.10e4
  • 1.10e4
  • 1.10e4
69.99
  • 69.99
  • 69.99
  • 68.74
  • 63.32
  • 63.32
  • 63.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
9.71e3
  • 9.71e3
  • 9.75e3
  • 9.96e3
  • 1.02e4
  • 1.07e4
67.48
  • 67.48
  • 67.37
  • 66.64
  • 65.89
  • 64.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001708jaw skeleton
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
  • 1.12e4
  • 1.12e4
  • 1.49e4
66.66
  • 66.66
  • 62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001782pigmented layer of retina
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
  • 1.07e4
66.66
  • 66.66
  • 64.28
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.00e4
  • 1.00e4
66.50
  • 66.50
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.02e4
  • 1.02e4
  • 1.06e4
  • 1.08e4
  • 1.26e4
  • 1.26e4
65.77
  • 65.77
  • 64.56
  • 63.87
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.02e4
  • 1.02e4
  • 1.02e4
65.77
  • 65.77
  • 65.77
AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.05e4
64.69
  • 64.69
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.07e4
  • 1.07e4
  • 1.15e4
  • 1.15e4
64.27
  • 64.27
  • 61.53
  • 61.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.10e4
  • 1.10e4
  • 1.10e4
  • 1.14e4
  • 1.14e4
63.14
  • 63.14
  • 63.14
  • 61.75
  • 61.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007390pectoral appendage cartilage tissue
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.12e4
62.49
  • 62.49
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.14e4
  • 1.14e4
  • 1.23e4
61.75
  • 61.75
  • 58.80
AEIR
  • AEIR
  • AEIR
UBERON:0001015musculature
  • ZFS:0000037Larval:Day 5
1.16e4
  • 1.16e4
61.10
  • 61.10
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.20e4
  • 1.20e4
  • 1.26e4
59.98
  • 59.98
  • 57.87
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.20
  • 58.20
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
1.28e4
  • 1.28e4
57.12
  • 57.12
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.30e4
  • 1.30e4
56.36
  • 56.36
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000029Pharyngula:Prim-5
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.06
  • 55.06
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.43e4
  • 1.43e4
  • 1.75e4
52.13
  • 52.13
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001846internal ear
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.91
  • 42.91
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.09
  • 39.09
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.64
  • 36.64
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.43
  • 29.43
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.38
  • 29.38
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000024492.

Cross-references

EnsemblENSDARG00000024492 (col9a2)
ZFINZDB-GENE-030131-9786 (col9a2)
EMBLBX276085
Uniprot/SPTREMBLF1Q7T7, F1Q7T7_DANRE, Q1LXU2, Q1LXU2_DANRE

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