D. rerio Gene: zgc:162964 - ENSDARG00000024602 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000024602
Namezgc:162964
Descriptionzgc:162964 [Source:ZFIN;Acc:ZDB-GENE-030131-9798]
OrganismDanio rerio (zebrafish)
Synonym(s)cb366, golph1, sb:cb366, wu:fa04b12, wu:fd14b03, wu:fi29h06

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
3.15e3
  • 3.15e3
  • 4.70e3
  • 6.53e3
  • 6.65e3
  • 6.89e3
  • 7.03e3
89.47
  • 89.47
  • 84.28
  • 78.14
  • 77.73
  • 76.94
  • 76.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
3.56e3
  • 3.56e3
  • 5.37e3
  • 5.76e3
  • 5.94e3
  • 6.73e3
  • 8.66e3
  • 1.05e4
  • 1.14e4
  • 1.18e4
  • 1.21e4
  • 1.24e4
  • 1.27e4
  • 1.27e4
  • 1.31e4
  • 1.35e4
  • 1.38e4
  • 1.50e4
  • 1.50e4
88.10
  • 88.10
  • 82.01
  • 80.71
  • 80.11
  • 77.48
  • 71.01
  • 64.68
  • 61.71
  • 60.60
  • 59.46
  • 58.63
  • 57.62
  • 57.41
  • 56.17
  • 54.80
  • 53.74
  • 49.92
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.57e3
  • 3.57e3
  • 1.47e4
88.05
  • 88.05
  • 50.63
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.15e3
  • 5.15e3
82.75
  • 82.75
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.50e3
  • 5.50e3
81.60
  • 81.60
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
5.63e3
  • 5.63e3
  • 7.73e3
  • 8.50e3
  • 1.07e4
  • 1.09e4
81.15
  • 81.15
  • 74.12
  • 71.53
  • 64.17
  • 63.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.73e3
  • 5.73e3
80.83
  • 80.83
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.32e3
  • 6.32e3
78.84
  • 78.84
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.81e3
  • 6.81e3
77.20
  • 77.20
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.35e3
  • 8.35e3
72.04
  • 72.04
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.79e3
  • 8.79e3
70.56
  • 70.56
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.80e3
  • 8.80e3
70.55
  • 70.55
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
9.44e3
  • 9.44e3
  • 1.01e4
  • 1.03e4
  • 1.06e4
  • 1.15e4
  • 1.17e4
  • 1.19e4
  • 1.26e4
  • 1.58e4
  • 1.72e4
68.38
  • 68.38
  • 66.16
  • 65.38
  • 64.59
  • 61.54
  • 60.85
  • 60.07
  • 57.97
  • 47.21
  • 42.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.63e3
  • 9.63e3
67.76
  • 67.76
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.74e3
  • 9.74e3
67.38
  • 67.38
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
9.88e3
  • 9.88e3
  • 1.09e4
66.91
  • 66.91
  • 63.46
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.26
  • 63.26
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.13e4
  • 1.13e4
  • 1.50e4
62.15
  • 62.15
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
  • 1.20e4
  • 1.24e4
  • 1.33e4
59.98
  • 59.98
  • 59.98
  • 58.32
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.20e4
  • 1.20e4
59.66
  • 59.66
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.49
  • 59.49
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.23e4
  • 1.23e4
  • 1.95e4
58.88
  • 58.88
  • 34.82
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.88
  • 58.88
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.26e4
  • 1.26e4
  • 1.38e4
  • 1.55e4
57.66
  • 57.66
  • 53.89
  • 48.13
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.38
  • 53.38
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.41e4
  • 1.41e4
52.88
  • 52.88
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
  • 1.49e4
51.24
  • 51.24
  • 50.08
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.55e4
  • 1.55e4
48.01
  • 48.01
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.34
  • 44.34
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX323819
EnsemblENSDARG00000024602 (zgc:162964)
Uniprot/SPTREMBLF1QA40, F1QA40_DANRE
ZFINZDB-GENE-030131-9798 (zgc:162964)

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