D. rerio Gene: pgm3 - ENSDARG00000024654 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000024654
Namepgm3
Descriptionphosphoglucomutase 3 [Source:ZFIN;Acc:ZDB-GENE-041024-13]
OrganismDanio rerio (zebrafish)
Synonym(s)fc08c11, fc39c03, wu:fc08c11, wu:fc39c03, zgc:91932
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.25e3
  • 2.25e3
92.48
  • 92.48
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
6.04e3
  • 6.04e3
79.78
  • 79.78
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
6.36e3
  • 6.36e3
  • 7.58e3
  • 9.63e3
  • 1.02e4
  • 1.13e4
78.71
  • 78.71
  • 74.62
  • 67.77
  • 65.81
  • 62.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.01e3
  • 7.01e3
76.54
  • 76.54
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000106zygote stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
7.11e3
  • 7.11e3
  • 9.13e3
  • 9.34e3
  • 9.39e3
  • 9.96e3
  • 9.96e3
  • 1.05e4
  • 1.14e4
  • 1.16e4
  • 1.18e4
  • 1.18e4
  • 1.18e4
  • 1.18e4
  • 1.19e4
  • 1.20e4
  • 1.24e4
  • 1.24e4
  • 1.26e4
  • 1.28e4
  • 1.29e4
  • 1.47e4
  • 1.47e4
  • 1.49e4
76.18
  • 76.18
  • 69.43
  • 68.74
  • 68.55
  • 66.66
  • 66.65
  • 64.77
  • 61.75
  • 61.28
  • 60.45
  • 60.45
  • 60.38
  • 60.37
  • 60.12
  • 59.75
  • 58.49
  • 58.39
  • 57.89
  • 57.26
  • 56.70
  • 50.90
  • 50.68
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.12e3
  • 7.12e3
76.17
  • 76.17
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
8.08e3
  • 8.08e3
  • 8.88e3
  • 8.93e3
  • 1.08e4
  • 1.08e4
  • 1.19e4
  • 1.20e4
  • 1.24e4
  • 1.28e4
  • 1.38e4
72.95
  • 72.95
  • 70.27
  • 70.11
  • 63.92
  • 63.85
  • 59.99
  • 59.81
  • 58.60
  • 57.06
  • 53.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.18e3
  • 8.18e3
72.61
  • 72.61
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.46e3
  • 8.46e3
71.69
  • 71.69
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
8.61e3
  • 8.61e3
  • 1.05e4
  • 1.20e4
  • 1.32e4
  • 1.68e4
  • 1.69e4
71.19
  • 71.19
  • 64.94
  • 59.74
  • 55.70
  • 43.69
  • 43.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
8.66e3
  • 8.66e3
  • 1.14e4
71.01
  • 71.01
  • 61.97
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.08e3
  • 9.08e3
69.61
  • 69.61
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.19e3
  • 9.19e3
69.25
  • 69.25
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.64e3
  • 9.64e3
67.72
  • 67.72
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
  • 1.29e4
65.05
  • 65.05
  • 56.93
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.57
  • 64.57
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.14e4
  • 1.14e4
61.81
  • 61.81
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.77
  • 61.77
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
  • 1.21e4
  • 1.31e4
59.82
  • 59.82
  • 59.49
  • 56.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.04
  • 59.04
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.83
  • 58.83
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.24e4
  • 1.24e4
58.38
  • 58.38
AEIR
  • AEIR
UBERON:0000178blood
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.24e4
  • 1.24e4
  • 1.24e4
58.32
  • 58.32
  • 58.32
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
  • 1.57e4
55.83
  • 55.83
  • 47.40
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.33e4
  • 1.33e4
55.50
  • 55.50
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.33e4
  • 1.33e4
  • 1.33e4
  • 1.35e4
55.36
  • 55.36
  • 55.30
  • 54.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.66
  • 52.66
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.44
  • 52.44
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
  • 1.52e4
52.43
  • 52.43
  • 48.94
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
  • 1.69e4
49.92
  • 49.92
  • 43.36
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.59
  • 44.59
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000024654.

Cross-references

EnsemblENSDARG00000024654 (pgm3)
ZFINZDB-GENE-041024-13 (pgm3)
EMBLCU571169
Uniprot/SPTREMBLF1QHK0, F1QHK0_DANRE

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