D. rerio Gene: selenbp1 - ENSDARG00000024717 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000024717
Nameselenbp1
Descriptionselenium binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1436]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:65844
Orthologs(s)32 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
876
  • 876
97.07
  • 97.07
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.62e3
  • 1.62e3
94.57
  • 94.57
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.73e3
  • 1.73e3
94.20
  • 94.20
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.80e3
  • 1.80e3
  • 9.34e3
  • 1.12e4
  • 1.21e4
93.97
  • 93.97
  • 68.74
  • 62.48
  • 59.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.46e3
  • 2.46e3
91.78
  • 91.78
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.72e3
  • 2.72e3
90.91
  • 90.91
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.11e3
  • 3.11e3
89.59
  • 89.59
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
3.22e3
  • 3.22e3
  • 3.74e3
89.22
  • 89.22
  • 87.49
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.60e3
  • 3.60e3
87.95
  • 87.95
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.86e3
  • 3.86e3
87.07
  • 87.07
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.02e3
  • 4.02e3
86.56
  • 86.56
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.14e3
  • 4.14e3
86.15
  • 86.15
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.80e3
  • 4.80e3
83.92
  • 83.92
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.28e3
  • 5.28e3
82.33
  • 82.33
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
5.37e3
  • 5.37e3
  • 6.55e3
  • 7.96e3
  • 8.79e3
  • 8.99e3
  • 1.01e4
  • 1.04e4
  • 1.06e4
  • 1.06e4
  • 1.07e4
  • 1.09e4
  • 1.10e4
  • 1.12e4
  • 1.18e4
82.02
  • 82.02
  • 78.06
  • 73.35
  • 70.58
  • 69.88
  • 66.22
  • 65.25
  • 64.57
  • 64.55
  • 64.13
  • 63.65
  • 63.07
  • 62.39
  • 60.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
5.39e3
  • 5.39e3
  • 7.26e3
  • 9.24e3
81.96
  • 81.96
  • 75.70
  • 69.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.58e3
  • 5.58e3
  • 9.88e3
81.30
  • 81.30
  • 66.92
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.60e3
  • 5.60e3
  • 1.16e4
81.25
  • 81.25
  • 61.12
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.80e3
  • 5.80e3
80.57
  • 80.57
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
6.20e3
  • 6.20e3
  • 6.97e3
  • 7.02e3
  • 7.42e3
  • 8.26e3
  • 8.41e3
  • 9.60e3
  • 9.80e3
  • 1.02e4
  • 1.05e4
79.24
  • 79.24
  • 76.65
  • 76.51
  • 75.17
  • 72.34
  • 71.86
  • 67.85
  • 67.17
  • 65.79
  • 64.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
6.32e3
  • 6.32e3
  • 7.30e3
  • 8.61e3
  • 8.71e3
  • 8.75e3
78.85
  • 78.85
  • 75.57
  • 71.18
  • 70.84
  • 70.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
6.80e3
  • 6.80e3
  • 7.90e3
  • 8.86e3
  • 1.01e4
  • 1.13e4
  • 1.21e4
77.24
  • 77.24
  • 73.56
  • 70.35
  • 66.13
  • 62.01
  • 59.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.16e3
  • 7.16e3
76.03
  • 76.03
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.58e3
  • 7.58e3
74.63
  • 74.63
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.53e3
  • 8.53e3
  • 1.12e4
  • 1.17e4
71.43
  • 71.43
  • 62.48
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
9.44e3
  • 9.44e3
  • 9.99e3
68.39
  • 68.39
  • 66.54
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.03e4
  • 1.03e4
65.48
  • 65.48
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.04e4
  • 1.04e4
  • 1.14e4
65.17
  • 65.17
  • 61.79
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.05e4
  • 1.05e4
64.97
  • 64.97
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.05e4
  • 1.05e4
64.84
  • 64.84
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.06e4
  • 1.06e4
64.55
  • 64.55
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.76
  • 63.76
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.09e4
  • 1.09e4
63.48
  • 63.48
AEIR
  • AEIR
UBERON:0001637artery
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.15e4
62.49
  • 62.49
  • 62.49
  • 61.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001638vein
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.15e4
  • 1.15e4
  • 1.15e4
  • 1.20e4
61.53
  • 61.53
  • 61.53
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.31e4
  • 1.31e4
  • 1.39e4
  • 1.39e4
  • 1.39e4
56.23
  • 56.23
  • 53.31
  • 53.31
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001073axial vasculature
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
  • 1.49e4
49.99
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species24 genesCompare expression
Bilateria23 species32 genesCompare expression

Orthology information comes from OMA : ENSDARG00000024717.

Cross-references

EnsemblENSDARG00000024717 (selenbp1)
ZFINZDB-GENE-040426-1436 (selenbp1)
EMBLBX005412
Uniprot/SPTREMBLE9QB46, E9QB46_DANRE

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