Gene: col5a2b - ENSDARG00000024847 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000024847
Name	col5a2b
Description	collagen, type V, alpha 2b [Source:ZFIN;Acc:ZDB-GENE-110406-2]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:rp71-56k2.1
Paralog(s)	439 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	5.05e3 5.05e3	83.09 83.09	AEIR AEIR
UBERON:0000033	head	[+] 1 stage UBERON:0000066fully formed stage	8.26e3 8.26e3	72.36 72.36	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.09e4 1.09e4	63.55 63.55	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.43e4 1.43e4	52.08 52.08	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.44e4 1.44e4	51.66 51.66	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.47e4 1.47e4 2.13e4	50.77 50.77 28.79	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.59e4 1.59e4	46.63 46.63	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.63e4 1.63e4	45.47 45.47	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000011Blastula:1k-cell	1.66e4 1.66e4	44.52 44.52	AEIR AEIR
UBERON:0000922	embryo	[+] 3 stages ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage ZFS:0000037Larval:Day 5	1.68e4 1.68e4 2.03e4 2.24e4	43.80 43.80 32.08 24.83	AEIR AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.82e4 1.82e4	38.90 38.90	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.85e4 1.85e4	37.93 37.93	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.95e4 1.95e4	34.81 34.81	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	2.05e4 2.05e4	31.46 31.46	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Bilateria	6 genes ENSDARG00000011407 col2a1b ENSDARG00000012405 col1a1a ENSDARG00000020007 col1a2 ENSDARG00000031678 COL5A2 (1 to many) ENSDARG00000035809 col1a1b ENSDARG00000069093 col2a1a	Compare expression	[+]
Eukaryota	439 genes ENSDARG00000000857 mapk14a ENSDARG00000001558 kifc1 ENSDARG00000001969 txlng ENSDARG00000002131 celf2 ENSDARG00000002267 dcaf13 ENSDARG00000002597 pabpc1l ENSDARG00000002635 FAM184A (1 to many) ENSDARG00000002696 gnb3b ENSDARG00000003022 limk1b ENSDARG00000003167 mlst8 ENSDARG00000003867 cdk20 ENSDARG00000004176 ulk4 ENSDARG00000004358 gnb3a ENSDARG00000004372 fmnl3 ENSDARG00000004794 ccdc146 ENSDARG00000004954 grna ENSDARG00000005098 zgc:86764 ENSDARG00000005104 limk2 ENSDARG00000005315 celf1 ENSDARG00000005456 katnb1 ENSDARG00000005699 ddx19 ENSDARG00000005908 clk4b ENSDARG00000005916 srpk3 ENSDARG00000005993 prc1b ENSDARG00000006125 csnk1db ENSDARG00000006174 lrrc23 ENSDARG00000006225 ddx39aa ENSDARG00000006283 waslb ENSDARG00000006409 mapk12b ENSDARG00000006712 wipf2b ENSDARG00000006983 celf3b ENSDARG00000007025 ttc9c ENSDARG00000007135 cnot3a ENSDARG00000007755 wdr61 ENSDARG00000007864 pimr195 ENSDARG00000008370 csnk1da ENSDARG00000008784 prpf4ba ENSDARG00000008906 si:ch211-241e1.5 ENSDARG00000008966 tbl1xr1b ENSDARG00000009170 ctr9 ENSDARG00000009689 daam1b ENSDARG00000009740 ppp1r7 ENSDARG00000009864 ddx55 ENSDARG00000009870 mapk8b ENSDARG00000010603 kctd9b ENSDARG00000010873 DDX17 ENSDARG00000011020 hnrnpa1a ENSDARG00000011079 wdr3 ENSDARG00000011407 col2a1b ENSDARG00000011673 si:ch211-246m6.5 ENSDARG00000012135 fbxl2 ENSDARG00000012140 ccnl1b ENSDARG00000012405 col1a1a ENSDARG00000012485 aurka ENSDARG00000012586 fmnl2a ENSDARG00000012899 ddx49 ENSDARG00000013025 ints6 ENSDARG00000013351 cirbpb ENSDARG00000013729 srsf6a ENSDARG00000014005 lrrc45 ENSDARG00000014081 fam184a ENSDARG00000014113 wasla ENSDARG00000014366 luc7l3 ENSDARG00000014402 smc1b ENSDARG00000014420 elavl3 ENSDARG00000015059 daam1a ENSDARG00000015111 ddx39ab ENSDARG00000015149 wasa ENSDARG00000015254 fzr1a ENSDARG00000015538 znf207a ENSDARG00000015681 gsk3ab ENSDARG00000015853 rnps1 ENSDARG00000016260 fxr2 ENSDARG00000016496 cdk8 ENSDARG00000016543 rnmtl1a ENSDARG00000016630 tprb ENSDARG00000016769 sgtb ENSDARG00000016783 srsf6b ENSDARG00000017055 zymnd12 ENSDARG00000017162 KIF3C ENSDARG00000017219 pabpc1a ENSDARG00000017229 megf10 ENSDARG00000017329 cdkl1 ENSDARG00000017617 alg6 ENSDARG00000017681 mapk4 ENSDARG00000017708 lrrc40 ENSDARG00000017803 gsk3b ENSDARG00000017842 syvn1 ENSDARG00000017874 dnajc3b ENSDARG00000017901 tln2a ENSDARG00000017931 ddx26b ENSDARG00000018241 mfap1 ENSDARG00000018285 pdpk1b ENSDARG00000018425 si:ch211-175g6.7 ENSDARG00000018476 pak2b ENSDARG00000018516 stk38b ENSDARG00000019130 plk2b ENSDARG00000019278 GNB4 ENSDARG00000019765 LUC7L2 ENSDARG00000019842 cnot3b ENSDARG00000019941 sgta ENSDARG00000019973 stk38a ENSDARG00000020007 col1a2 ENSDARG00000020218 amfr ENSDARG00000020527 nup62l ENSDARG00000020573 ddx3a ENSDARG00000020594 txlnba ENSDARG00000020798 necap1 ENSDARG00000020913 ddx56 ENSDARG00000021140 pabpc1b ENSDARG00000021209 kctd9a ENSDARG00000021462 daw1 ENSDARG00000021697 morn3 ENSDARG00000021945 ddx23 ENSDARG00000021973 st13 ENSDARG00000022415 srsf10a ENSDARG00000022810 fzr1b ENSDARG00000022968 fxr1 ENSDARG00000024492 col9a2 ENSDARG00000025081 grnb ENSDARG00000025332 rbm28 ENSDARG00000025535 clint1a ENSDARG00000026350 wasb ENSDARG00000026577 cdk2 ENSDARG00000027552 mapk1 ENSDARG00000027734 srsf5b ENSDARG00000028393 daam2 ENSDARG00000028469 rps6ka2 ENSDARG00000028721 mapk14b ENSDARG00000029043 nupl2 ENSDARG00000029368 srpk2 ENSDARG00000029501 gsk3aa ENSDARG00000029818 srsf5a ENSDARG00000029911 casc3 ENSDARG00000030163 cdk21 ENSDARG00000030262 si:ch211-220i18.4 ENSDARG00000030267 gtf3aa ENSDARG00000030789 ddx18 ENSDARG00000031293 dnajc9 ENSDARG00000031560 srpk1b ENSDARG00000031588 si:dkey-239b22.1 ENSDARG00000031678 COL5A2 (1 to many) ENSDARG00000031693 KIF9 ENSDARG00000031698 mylk2 ENSDARG00000031888 mapk8a ENSDARG00000032005 ccdc65 ENSDARG00000032285 zgc:113294 ENSDARG00000032516 rrp36 ENSDARG00000032614 msi2b ENSDARG00000032637 si:dkey-261m9.12 ENSDARG00000033437 rps6ka1 ENSDARG00000033462 pimr111 ENSDARG00000033501 zgc:64189 ENSDARG00000034042 dnal1 ENSDARG00000034256 cdk10 ENSDARG00000034497 fbxl14a ENSDARG00000034668 celf3a ENSDARG00000035187 abl1 ENSDARG00000035325 srsf7a ENSDARG00000035357 gnb2 ENSDARG00000035507 ddx31 ENSDARG00000035519 histh1l ENSDARG00000035556 rps6ka3a ENSDARG00000035809 col1a1b ENSDARG00000036069 ddx39b ENSDARG00000036161 hnrnpa0l ENSDARG00000036162 hnrnpa0b ENSDARG00000036675 hnrnpa1b ENSDARG00000037109 pwp2h ENSDARG00000037283 plrg1 ENSDARG00000037433 fmr1 ENSDARG00000037574 rps6kal ENSDARG00000037640 aurkb ENSDARG00000037777 stk16 ENSDARG00000037845 col9a3 ENSDARG00000037855 taf11 ENSDARG00000037928 ddx42 ENSDARG00000037963 nek6 ENSDARG00000037965 srrm2 ENSDARG00000038068 ddx5 ENSDARG00000038559 h1f0 ENSDARG00000038695 elavl1 ENSDARG00000038754 plk3 ENSDARG00000038835 ppid ENSDARG00000039062 morn4 ENSDARG00000040310 prpf4bb ENSDARG00000040732 elavl2 ENSDARG00000040985 itgbl1 ENSDARG00000041110 dnajc3a ENSDARG00000041226 cdc40 ENSDARG00000041600 wdr83 ENSDARG00000041991 rrp9 ENSDARG00000042021 mapk12a ENSDARG00000042182 drc1 ENSDARG00000042553 pex7 ENSDARG00000042590 rbm19 ENSDARG00000042946 hook1 ENSDARG00000043126 blf ENSDARG00000043134 cux1b ENSDARG00000043211 ripk4 ENSDARG00000043328 fip1l1a ENSDARG00000043550 ENKD1 ENSDARG00000043858 cdk19 ENSDARG00000043938 lrrc57 ENSDARG00000044212 CR735126.1 ENSDARG00000044325 zgc:193690 ENSDARG00000044436 rps6ka4 ENSDARG00000044488 pak1ip1 ENSDARG00000044491 kif20a ENSDARG00000044811 cdk9 ENSDARG00000045150 csnk1e ENSDARG00000045298 wipf2a ENSDARG00000045482 stk38l ENSDARG00000045639 elavl4 ENSDARG00000045752 si:ch211-161n3.4 ENSDARG00000045776 cnbpa ENSDARG00000045801 fbxl14b ENSDARG00000045836 mapk11 ENSDARG00000045837 CD6 (1 to many) ENSDARG00000046002 necap2 ENSDARG00000046074 stk11 ENSDARG00000051718 si:ch211-113a14.24 ENSDARG00000051735 si:ch211-113a14.18 ENSDARG00000051916 cdk7 ENSDARG00000052344 tbl3 ENSDARG00000052379 ccdc22 ENSDARG00000052468 GSK3B (1 to many) ENSDARG00000052674 csnk1a1 ENSDARG00000053240 kif6 ENSDARG00000055022 pds5a ENSDARG00000055124 ccnl1a ENSDARG00000055470 cdc16 ENSDARG00000055713 fmnl1a ENSDARG00000055754 smc1a ENSDARG00000055903 luc7l ENSDARG00000055945 asph ENSDARG00000056683 cdk5 ENSDARG00000056966 nek7 ENSDARG00000057632 ppp1r42 ENSDARG00000057903 si:ch211-266g18.10 ENSDARG00000057927 rps6ka3b ENSDARG00000057997 tmf1 ENSDARG00000058148 dnajc7 ENSDARG00000058203 smc1al ENSDARG00000058346 sass6 ENSDARG00000058381 zgc:171775 ENSDARG00000058467 prpf40a ENSDARG00000058470 mapk13 ENSDARG00000058471 plk1 ENSDARG00000058479 zgc:110425 ENSDARG00000058696 tbl1xr1a ENSDARG00000058803 grk1a ENSDARG00000059259 pabpc4 ENSDARG00000059351 hnrnpa3 ENSDARG00000059658 mrm1 ENSDARG00000059870 clk2b ENSDARG00000060169 mns1 ENSDARG00000060411 ddx28 ENSDARG00000060438 tbl1x ENSDARG00000060551 rps6ka5 ENSDARG00000060596 prkaa1 ENSDARG00000060641 prkaa2 ENSDARG00000060893 col8a2 ENSDARG00000061338 ddx6 ENSDARG00000062235 lrrc34 ENSDARG00000062304 pdpk1a ENSDARG00000062307 ccdc61 ENSDARG00000062362 tpcn1 ENSDARG00000062868 eea1 ENSDARG00000062954 clk2a ENSDARG00000063385 cenpe ENSDARG00000063522 bbs4 ENSDARG00000063626 ddx21 ENSDARG00000068103 cfap45 ENSDARG00000068177 pak2a ENSDARG00000068421 ttc9b ENSDARG00000068760 tnks1bp1 ENSDARG00000069082 rnmtl1b ENSDARG00000069093 col2a1a ENSDARG00000069129 fhdc3 ENSDARG00000069445 pimr128 ENSDARG00000069499 spag1b ENSDARG00000070045 celf4 ENSDARG00000070127 nfxl1 ENSDARG00000070228 cdk6 ENSDARG00000070431 fip1l1b ENSDARG00000070452 saraf ENSDARG00000070573 mapk3 ENSDARG00000070600 DYRK3 ENSDARG00000070740 pimr89 ENSDARG00000070922 cnbpb ENSDARG00000071084 wipf1b ENSDARG00000071375 celf5a ENSDARG00000071583 gtf3ab ENSDARG00000073699 col9a1a ENSDARG00000073808 WDR31 ENSDARG00000073913 pimr213 ENSDARG00000073997 srpk1a ENSDARG00000074012 si:ch1073-159d7.7 ENSDARG00000074121 dnmbp ENSDARG00000074363 TTC9 ENSDARG00000074611 wdr37 ENSDARG00000074820 si:dkey-253d23.9 ENSDARG00000074955 nup98 ENSDARG00000075022 si:ch211-93e11.8 ENSDARG00000075041 fmnl2b ENSDARG00000075380 kri1 ENSDARG00000075508 si:dkey-108k21.10 ENSDARG00000075530 pigu ENSDARG00000075567 fbxl20 ENSDARG00000076060 diaph2 ENSDARG00000076526 gar1 ENSDARG00000077215 eif4g3a ENSDARG00000077357 LRRC61 ENSDARG00000077364 mapk9 ENSDARG00000077405 PSIP1 (1 to many) ENSDARG00000077456 si:ch211-113a14.12 ENSDARG00000077721 knop1 ENSDARG00000077906 rnf165a ENSDARG00000078817 rnf165b ENSDARG00000078959 gb:eh507706 ENSDARG00000079500 kif3cb ENSDARG00000086411 srsf10b ENSDARG00000086565 si:dkey-201l21.2 ENSDARG00000086763 CR677591.1 ENSDARG00000087398 fbn2b ENSDARG00000087538 kif3a ENSDARG00000087554 cdk1 ENSDARG00000087937 cdk4 ENSDARG00000088283 si:ch73-248e21.5 ENSDARG00000088375 zgc:174704 ENSDARG00000088628 CR450701.1 ENSDARG00000088889 si:dkey-108k21.14 ENSDARG00000089142 zgc:113119 ENSDARG00000089302 hnrnpa0a ENSDARG00000089372 clk4a ENSDARG00000089604 CABZ01054405.1 ENSDARG00000090179 si:ch211-117c9.1 ENSDARG00000090454 gnb1a ENSDARG00000090752 plk2a ENSDARG00000090785 diaph3 ENSDARG00000091260 mylk4a ENSDARG00000091585 si:rp71-84d9.1 ENSDARG00000091760 cwf19l2 ENSDARG00000091831 ddx27 ENSDARG00000091905 si:dkey-108k21.21 ENSDARG00000092167 si:ch211-272h9.5 ENSDARG00000092395 si:ch73-36p18.1 ENSDARG00000092410 pimr89 ENSDARG00000092760 BX936303.1 ENSDARG00000092908 si:dkey-201l21.2 ENSDARG00000093672 si:dkey-4c15.10 ENSDARG00000094603 si:dkey-21h14.12 ENSDARG00000094646 dyrk2 ENSDARG00000094779 NEK10 ENSDARG00000094866 pimr152 ENSDARG00000095086 cfdp1 ENSDARG00000095263 si:dkey-145c18.4 ENSDARG00000095332 si:dkey-14d8.1 ENSDARG00000095605 CR846087.1 ENSDARG00000095853 si:ch211-57m13.3 ENSDARG00000095861 si:ch1073-441p17.1 ENSDARG00000095953 si:ch211-57m13.6 ENSDARG00000096663 si:dkey-249p7.4 ENSDARG00000096992 zgc:153405 ENSDARG00000098054 pimr194 ENSDARG00000098125 CABZ01072550.1 ENSDARG00000098236 BX324142.1 ENSDARG00000098365 lrrc74b ENSDARG00000098818 BX908792.1 ENSDARG00000098859 NOP14 ENSDARG00000098897 pds5b ENSDARG00000098942 rp9 ENSDARG00000099235 hook2 ENSDARG00000099370 AL954861.1 ENSDARG00000099430 atg16l1 ENSDARG00000099455 ogt.2 ENSDARG00000099458 ddx46 ENSDARG00000099459 BX510307.1 ENSDARG00000099470 muc5.3 ENSDARG00000099531 pimr58 ENSDARG00000099739 ddx41 ENSDARG00000100037 CU929317.1 ENSDARG00000100188 RNPS1 (1 to many) ENSDARG00000100216 pimr117 ENSDARG00000100420 tpcn2 ENSDARG00000100627 CR354537.1 ENSDARG00000100729 tln1 ENSDARG00000100741 cdc20 ENSDARG00000100866 SPAG16 ENSDARG00000100918 prc1a ENSDARG00000100981 CCDC39 ENSDARG00000101057 srsf7b ENSDARG00000101120 kif3b ENSDARG00000101142 si:ch211-182a13.1 ENSDARG00000101277 znf207b ENSDARG00000101315 CABZ01039820.1 ENSDARG00000101431 gas8 ENSDARG00000101605 pimr192 ENSDARG00000101744 hug ENSDARG00000101766 ptmab ENSDARG00000101877 rbm34 ENSDARG00000101933 CELF6 ENSDARG00000102101 WDR97 ENSDARG00000102261 RSPH1 ENSDARG00000102546 cdk11b ENSDARG00000102678 si:dkey-15h8.12 ENSDARG00000102730 mapk10 ENSDARG00000102738 si:ch73-138e16.8 ENSDARG00000102959 zgc:171220 ENSDARG00000103004 tpra ENSDARG00000103443 vwde ENSDARG00000103467 limk1a ENSDARG00000103634 si:ch73-329n5.6 ENSDARG00000103672 cirbpa ENSDARG00000103875 CABZ01048402.2 ENSDARG00000104035 TTC16 ENSDARG00000104110 col4a2 ENSDARG00000104170 si:dkey-208k4.2 ENSDARG00000104208 zgc:172128 ENSDARG00000104263 FMNL1 (1 to many) ENSDARG00000104372 gnb1b ENSDARG00000104683 BX640408.1 ENSDARG00000104708 ddx24 ENSDARG00000104972 pimr199 ENSDARG00000105125 BX005308.2 ENSDARG00000105207 CABZ01084137.1 ENSDARG00000105243 ogt.1 ENSDARG00000105290 AL929389.1 ENSDARG00000105293 srsf4 ENSDARG00000105328 si:dkey-23a13.17 ENSDARG00000105333 fbn1 ENSDARG00000105350 si:ch1073-153i20.4 ENSDARG00000105364 si:ch73-223f5.1 ENSDARG00000105430 si:ch73-368j24.11 ENSDARG00000105431 si:dkey-23a13.9 ENSDARG00000105457 si:cabz01021066.1 ENSDARG00000105479 si:ch211-126c2.4 ENSDARG00000105502 si:ch73-368j24.12	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000024847.

Cross-references

Ensembl	ENSDARG00000024847 (col5a2b)
ZFIN	ZDB-GENE-110406-2 (col5a2b)
EMBL	BX640508
Uniprot/SPTREMBL	E7FE47, E7FE47_DANRE