D. rerio Gene: tbx5a - ENSDARG00000024894 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000024894
Nametbx5a
DescriptionT-box 5a [Source:ZFIN;Acc:ZDB-GENE-991124-7]
OrganismDanio rerio (zebrafish)
Synonym(s)b8jks5, etid310031.5, heartstrings, hst, q9ptk3, q9pus7, tbx5, tbx5.1, zf-tbx5, ztbx5

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005419pectoral appendage bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
712
  • 712
  • 1.66e3
  • 1.87e3
  • 4.98e3
  • 9.13e3
  • 9.13e3
  • 9.96e3
97.62
  • 97.62
  • 94.45
  • 93.75
  • 83.33
  • 69.43
  • 69.43
  • 66.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
934
  • 934
  • 3.20e3
  • 4.98e3
  • 5.98e3
  • 6.40e3
  • 7.47e3
  • 9.96e3
  • 1.24e4
  • 1.49e4
96.88
  • 96.88
  • 89.28
  • 83.33
  • 79.99
  • 78.57
  • 75.00
  • 66.67
  • 58.33
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
934
  • 934
  • 4.98e3
  • 7.91e3
  • 7.91e3
  • 7.91e3
  • 8.54e3
96.88
  • 96.88
  • 83.33
  • 73.52
  • 73.52
  • 73.52
  • 71.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
1.18e3
  • 1.18e3
  • 2.49e3
  • 5.97e3
  • 9.96e3
  • 1.29e4
  • 1.36e4
  • 1.37e4
  • 1.39e4
96.05
  • 96.05
  • 91.67
  • 80.00
  • 66.67
  • 56.65
  • 54.53
  • 54.15
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000032Pharyngula:High-pec
2.30e3
  • 2.30e3
  • 2.34e3
  • 6.29e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 8.65e3
  • 9.96e3
  • 1.39e4
92.31
  • 92.31
  • 92.15
  • 78.96
  • 75.00
  • 75.00
  • 75.00
  • 71.04
  • 66.67
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005729pectoral appendage field
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000024Segmentation:5-9 somites
2.49e3
  • 2.49e3
  • 3.73e3
  • 3.73e3
  • 7.47e3
  • 7.47e3
  • 1.49e4
91.67
  • 91.67
  • 87.50
  • 87.50
  • 75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
2.99e3
  • 2.99e3
  • 1.12e4
90.00
  • 90.00
  • 62.50
AEIR
  • AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
3.73e3
  • 3.73e3
  • 9.96e3
  • 1.49e4
87.50
  • 87.50
  • 66.66
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000034Hatching:Pec-fin
4.87e3
  • 4.87e3
  • 7.47e3
  • 1.19e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
83.68
  • 83.68
  • 75.00
  • 60.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003081lateral plate mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
4.98e3
  • 4.98e3
  • 7.47e3
  • 9.33e3
  • 1.05e4
  • 1.07e4
83.33
  • 83.33
  • 75.00
  • 68.74
  • 64.99
  • 64.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.06e3
  • 5.06e3
83.06
  • 83.06
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
5.20e3
  • 5.20e3
  • 1.05e4
  • 1.15e4
  • 1.49e4
  • 1.74e4
  • 1.77e4
82.60
  • 82.60
  • 64.98
  • 61.33
  • 50.00
  • 41.65
  • 40.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
6.97e3
  • 6.97e3
  • 7.47e3
  • 8.04e3
76.66
  • 76.66
  • 74.99
  • 73.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002081cardiac atrium
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 75.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003413pectoral appendage bud mesenchyme
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0003902retinal neural layer
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003934mesenchyme pectoral fin
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
  • 7.47e3
  • 1.12e4
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 75.00
  • 62.50
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
7.47e3
  • 7.47e3
  • 1.05e4
74.99
  • 74.99
  • 64.98
AEIR
  • AEIR
  • AEIR
UBERON:0003084heart primordium
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
9.67e3
  • 9.67e3
  • 9.96e3
  • 1.31e4
67.63
  • 67.63
  • 66.66
  • 56.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.71e3
  • 9.71e3
67.50
  • 67.50
AEIR
  • AEIR
UBERON:0002349myocardium
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
  • 2.06e4
  • 2.29e4
62.50
  • 62.50
  • 31.05
  • 23.40
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0001065lateral mesoderm (Danio)
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002087atrioventricular canal
  • ZFS:0000033Hatching:Long-pec
1.16e4
  • 1.16e4
61.10
  • 61.10
AEIR
  • AEIR
UBERON:0005498primitive heart tube
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
59.98
  • 59.98
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.25e4
  • 1.25e4
  • 1.64e4
58.29
  • 58.29
  • 45.14
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.30e4
  • 1.30e4
56.42
  • 56.42
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.47e4
  • 1.47e4
  • 1.75e4
50.94
  • 50.94
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0002531paired fin bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0007278presumptive sinus venosus
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0010227future cardiac atrium
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005424presumptive retinal pigmented epithelium
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0006283future cardiac ventricle
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007390pectoral appendage cartilage tissue
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
1.51e4
  • 1.51e4
  • 1.55e4
  • 1.61e4
  • 1.62e4
  • 1.75e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.81e4
  • 2.24e4
49.54
  • 49.54
  • 48.07
  • 46.12
  • 45.62
  • 41.29
  • 40.54
  • 40.40
  • 40.27
  • 39.27
  • 25.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.12
  • 48.12
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.79e4
  • 1.79e4
  • 2.06e4
40.17
  • 40.17
  • 30.88
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.42
  • 34.42
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.48
  • 29.48
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
28.99
  • 28.99
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.23e4
  • 2.23e4
25.45
  • 25.45
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAF152607, AF179407, AF185283, CU181811
EnsemblENSDARG00000024894 (tbx5a)
Uniprot/SPTREMBLE7FBG7, E7FBG7_DANRE
Uniprot/SWISSPROTQ9IAK8, TBX5A_DANRE
ZFINZDB-GENE-991124-7 (tbx5a)

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