D. rerio Gene: prdm8 - ENSDARG00000025017 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000025017
Nameprdm8
DescriptionPR domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2747]
OrganismDanio rerio (zebrafish)
Synonym(s)prdm8a, wu:fd12b11, zgc:63680

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
3.25e3
  • 3.25e3
  • 3.74e3
  • 5.23e3
  • 6.40e3
  • 6.72e3
  • 6.72e3
  • 7.08e3
  • 7.47e3
89.13
  • 89.13
  • 87.49
  • 82.49
  • 78.56
  • 77.49
  • 77.49
  • 76.30
  • 74.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
4.08e3
  • 4.08e3
  • 4.08e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 9.44e3
  • 1.05e4
86.36
  • 86.36
  • 86.36
  • 74.99
  • 74.99
  • 74.98
  • 68.40
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
5.23e3
  • 5.23e3
  • 5.43e3
  • 1.32e4
82.49
  • 82.49
  • 81.81
  • 55.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
5.77e3
  • 5.77e3
  • 9.96e3
  • 1.05e4
  • 1.08e4
  • 1.10e4
  • 1.14e4
  • 1.22e4
  • 1.48e4
  • 1.49e4
  • 1.50e4
80.67
  • 80.67
  • 66.65
  • 64.69
  • 63.87
  • 63.32
  • 61.75
  • 59.08
  • 50.61
  • 50.25
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
5.98e3
  • 5.98e3
  • 9.19e3
  • 1.03e4
  • 1.14e4
  • 1.14e4
  • 1.16e4
79.99
  • 79.99
  • 69.22
  • 65.37
  • 61.75
  • 61.75
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
6.54e3
  • 6.54e3
  • 7.03e3
  • 9.96e3
  • 1.05e4
  • 1.05e4
  • 1.12e4
  • 1.12e4
78.12
  • 78.12
  • 76.46
  • 66.65
  • 64.69
  • 64.69
  • 62.48
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
6.71e3
  • 6.71e3
  • 1.65e4
77.52
  • 77.52
  • 44.90
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
6.77e3
  • 6.77e3
77.34
  • 77.34
AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
6.89e3
  • 6.89e3
  • 7.47e3
  • 8.71e3
  • 8.71e3
  • 9.51e3
  • 1.05e4
  • 1.05e4
76.92
  • 76.92
  • 74.99
  • 70.82
  • 70.82
  • 68.17
  • 64.99
  • 64.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
7.09e3
  • 7.09e3
  • 9.18e3
  • 9.42e3
  • 1.17e4
  • 1.58e4
76.26
  • 76.26
  • 69.27
  • 68.45
  • 60.80
  • 46.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
7.86e3
  • 7.86e3
  • 7.86e3
  • 8.54e3
  • 1.15e4
  • 1.15e4
  • 1.15e4
  • 1.15e4
  • 1.15e4
  • 1.20e4
73.67
  • 73.67
  • 73.67
  • 71.41
  • 61.53
  • 61.53
  • 61.53
  • 61.53
  • 61.53
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.44e3
  • 8.44e3
71.75
  • 71.75
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.96e3
  • 8.96e3
  • 9.60e3
69.99
  • 69.99
  • 67.85
AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
1.04e4
  • 1.04e4
  • 1.12e4
  • 1.12e4
  • 1.20e4
65.19
  • 65.19
  • 62.48
  • 62.48
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.05e4
64.69
  • 64.69
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
1.06e4
  • 1.06e4
  • 1.10e4
  • 1.10e4
64.56
  • 64.56
  • 63.14
  • 63.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.09e4
  • 1.09e4
  • 1.12e4
63.63
  • 63.63
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.16
  • 60.16
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.80
  • 59.80
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
  • 2.26e4
59.23
  • 59.23
  • 24.32
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.08
  • 59.08
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.48e4
  • 1.48e4
  • 1.58e4
50.52
  • 50.52
  • 46.99
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.49e4
  • 1.49e4
50.01
  • 50.01
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.82
  • 44.82
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.82
  • 38.82
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.78
  • 34.78
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.38e4
  • 2.38e4
20.38
  • 20.38
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX855615
EnsemblENSDARG00000025017 (prdm8)
Uniprot/SPTREMBLB8A5Y1, B8A5Y1_DANRE
ZFINZDB-GENE-040426-2747 (prdm8)

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