D. rerio Gene: nr3c1 - ENSDARG00000025032 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000025032
Namenr3c1
Descriptionnuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) [Source:ZFIN;Acc:ZDB-GENE-050522-503]
OrganismDanio rerio (zebrafish)
Synonym(s)fb13f09, glucocorticoid receptor, gr, utouto, utut, wu:fb13f09, zgc:113038

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
1.36e3
  • 1.36e3
  • 1.92e3
  • 2.14e3
  • 3.76e3
95.46
  • 95.46
  • 93.59
  • 92.84
  • 87.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
1.37e3
  • 1.37e3
  • 1.74e3
  • 1.98e3
  • 2.28e3
  • 2.88e3
  • 2.99e3
  • 3.17e3
  • 3.28e3
  • 3.73e3
  • 3.89e3
  • 4.91e3
  • 4.98e3
  • 5.05e3
  • 5.09e3
  • 5.58e3
  • 5.81e3
  • 6.15e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.86e3
  • 8.96e3
  • 8.96e3
95.43
  • 95.43
  • 94.18
  • 93.37
  • 92.38
  • 90.37
  • 90.01
  • 89.38
  • 89.02
  • 87.50
  • 86.97
  • 83.57
  • 83.33
  • 83.09
  • 82.96
  • 81.30
  • 80.55
  • 79.40
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 74.99
  • 74.99
  • 73.68
  • 69.99
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.22e3
  • 2.22e3
92.56
  • 92.56
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.24e3
  • 2.24e3
  • 2.31e3
92.49
  • 92.49
  • 92.27
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.29e3
  • 2.29e3
92.35
  • 92.35
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.68e3
  • 2.68e3
  • 4.69e3
91.01
  • 91.01
  • 84.30
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.76e3
  • 2.76e3
90.78
  • 90.78
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.77e3
  • 2.77e3
90.73
  • 90.73
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.80e3
  • 2.80e3
90.64
  • 90.64
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.01e3
  • 3.01e3
89.93
  • 89.93
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000039Larval:Days 7-13
3.27e3
  • 3.27e3
  • 5.99e3
  • 1.36e4
  • 1.49e4
89.04
  • 89.04
  • 79.93
  • 54.53
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.36e3
  • 3.36e3
88.76
  • 88.76
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
3.50e3
  • 3.50e3
  • 3.65e3
  • 4.07e3
  • 5.80e3
  • 6.55e3
  • 7.15e3
  • 7.45e3
  • 7.55e3
  • 7.81e3
  • 8.45e3
88.29
  • 88.29
  • 87.79
  • 86.36
  • 80.59
  • 78.05
  • 76.07
  • 75.05
  • 74.72
  • 73.85
  • 71.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
3.53e3
  • 3.53e3
  • 3.55e3
  • 4.30e3
88.19
  • 88.19
  • 88.12
  • 85.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000038Larval:Day 6
4.00e3
  • 4.00e3
  • 1.19e4
  • 1.49e4
86.61
  • 86.61
  • 60.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.08e3
  • 4.08e3
86.36
  • 86.36
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.14e3
  • 4.14e3
86.12
  • 86.12
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000038Larval:Day 6
  • ZFS:0000025Segmentation:10-13 somites
4.21e3
  • 4.21e3
  • 4.41e3
  • 1.12e4
  • 1.49e4
  • 1.49e4
85.92
  • 85.92
  • 85.23
  • 62.50
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000038Larval:Day 6
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
4.35e3
  • 4.35e3
  • 9.96e3
  • 1.21e4
  • 1.28e4
  • 1.35e4
85.43
  • 85.43
  • 66.67
  • 59.36
  • 57.13
  • 54.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.49e3
  • 4.49e3
84.96
  • 84.96
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.56e3
  • 4.56e3
84.74
  • 84.74
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.65e3
  • 5.65e3
81.09
  • 81.09
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
6.20e3
  • 6.20e3
  • 6.88e3
  • 8.13e3
  • 8.74e3
  • 9.25e3
  • 1.09e4
79.26
  • 79.26
  • 76.97
  • 72.79
  • 70.75
  • 69.04
  • 63.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.49e3
  • 6.49e3
78.29
  • 78.29
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
6.71e3
  • 6.71e3
  • 9.01e3
  • 1.00e4
  • 1.19e4
  • 1.38e4
77.55
  • 77.55
  • 69.82
  • 66.41
  • 60.05
  • 53.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
6.90e3
  • 6.90e3
  • 1.31e4
  • 1.42e4
  • 1.42e4
76.90
  • 76.90
  • 56.22
  • 52.47
  • 52.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.41e3
  • 7.41e3
75.20
  • 75.20
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
8.50e3
  • 8.50e3
71.55
  • 71.55
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.96e3
  • 8.96e3
70.01
  • 70.01
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000037Larval:Day 5
  • ZFS:0000038Larval:Day 6
1.07e4
  • 1.07e4
  • 1.49e4
64.28
  • 64.28
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002120pronephros
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.31e4
62.50
  • 62.50
  • 56.24
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.02
  • 62.02
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
1.21e4
  • 1.21e4
59.36
  • 59.36
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000033Hatching:Long-pec
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000039Larval:Days 7-13
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000039Larval:Days 7-13
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001293posterior kidney
  • ZFS:0000038Larval:Day 6
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004749blastodisc
  • UBERON:0000106zygote stage
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004750blastoderm
  • ZFS:0000019Gastrula:Shield
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0000093blastomere (Danio)
  • UBERON:00072322 cell stage
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

Do not show this banner again