D. rerio Gene: ppp3cb - ENSDARG00000025106 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000025106
Nameppp3cb
Descriptionprotein phosphatase 3, catalytic subunit, beta isozyme [Source:ZFIN;Acc:ZDB-GENE-050417-406]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fq19c08, zgc:110141
Orthologs(s)11 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
1.42e3
  • 1.42e3
  • 4.48e3
  • 6.79e3
  • 1.22e4
  • 1.68e4
95.25
  • 95.25
  • 85.00
  • 77.27
  • 59.08
  • 43.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.71e3
  • 1.71e3
  • 3.17e3
94.27
  • 94.27
  • 89.38
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.72e3
  • 1.72e3
  • 1.10e4
94.23
  • 94.23
  • 63.32
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
2.16e3
  • 2.16e3
  • 7.87e3
  • 1.04e4
  • 1.22e4
  • 1.28e4
92.78
  • 92.78
  • 73.64
  • 65.21
  • 59.22
  • 57.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
3.88e3
  • 3.88e3
  • 9.55e3
  • 9.96e3
87.00
  • 87.00
  • 68.01
  • 66.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
4.72e3
  • 4.72e3
  • 6.40e3
  • 6.97e3
  • 8.79e3
  • 8.79e3
  • 9.60e3
  • 1.03e4
  • 1.07e4
84.20
  • 84.20
  • 78.56
  • 76.66
  • 70.57
  • 70.57
  • 67.85
  • 65.37
  • 64.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000037Larval:Day 5
6.40e3
  • 6.40e3
78.57
  • 78.57
AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 1.12e4
75.00
  • 75.00
  • 62.50
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.85e3
  • 7.85e3
73.72
  • 73.72
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000037Larval:Day 5
8.30e3
  • 8.30e3
72.22
  • 72.22
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.40e3
  • 8.40e3
  • 8.96e3
  • 8.96e3
  • 9.60e3
  • 9.60e3
  • 1.12e4
  • 1.17e4
71.86
  • 71.86
  • 69.99
  • 69.99
  • 67.85
  • 67.85
  • 62.49
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
8.78e3
  • 8.78e3
  • 9.22e3
  • 1.10e4
  • 1.32e4
  • 1.34e4
  • 1.79e4
  • 1.80e4
70.59
  • 70.59
  • 69.14
  • 63.32
  • 55.89
  • 55.00
  • 40.18
  • 39.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.80e3
  • 8.80e3
70.54
  • 70.54
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
9.44e3
  • 9.44e3
  • 1.19e4
68.40
  • 68.40
  • 59.99
AEIR
  • AEIR
  • AEIR
UBERON:0000203pallium
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0002199integument
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
9.96e3
  • 9.96e3
  • 1.19e4
  • 1.49e4
  • 1.77e4
66.67
  • 66.67
  • 60.00
  • 50.00
  • 40.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.00e4
  • 1.00e4
66.38
  • 66.38
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.03e4
  • 1.03e4
  • 1.03e4
  • 1.05e4
  • 1.05e4
  • 1.09e4
  • 1.28e4
  • 1.29e4
65.61
  • 65.61
  • 65.61
  • 64.98
  • 64.98
  • 63.61
  • 57.13
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
1.22e4
  • 1.22e4
  • 1.31e4
59.08
  • 59.08
  • 56.22
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000035Larval:Protruding-mouth
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000035Larval:Protruding-mouth
1.24e4
  • 1.24e4
58.32
  • 58.32
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.27e4
  • 1.27e4
57.62
  • 57.62
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.38e4
  • 1.38e4
  • 1.62e4
53.94
  • 53.94
  • 45.60
AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000033Hatching:Long-pec
1.40e4
  • 1.40e4
53.10
  • 53.10
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.00
  • 52.00
AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.50
  • 48.50
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.24
  • 48.24
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
  • 1.64e4
46.09
  • 46.09
  • 44.97
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.74
  • 43.74
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.57
  • 43.57
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.77
  • 41.77
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.67
  • 41.67
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.33
  • 40.33
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.16
  • 40.16
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.17
  • 36.17
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Orthology information comes from OMA : ENSDARG00000025106.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Bilateria3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000025106.

Cross-references

EnsemblENSDARG00000025106 (ppp3cb)
ZFINZDB-GENE-050417-406 (ppp3cb)
Uniprot/SPTREMBLE7F169, E7F169_DANRE

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