D. rerio Gene: six6a - ENSDARG00000025187 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000025187
Namesix6a
DescriptionSIX homeobox 6a [Source:ZFIN;Acc:ZDB-GENE-040426-1282]
OrganismDanio rerio (zebrafish)
Synonym(s)six6, zgc:63871

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.15e3
  • 7.15e3
76.07
  • 76.07
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
  • 2.34e4
65.35
  • 65.35
  • 21.69
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.09e4
  • 1.09e4
63.35
  • 63.35
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.14e4
  • 1.14e4
  • 1.30e4
61.70
  • 61.70
  • 56.38
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.79
  • 55.79
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.35e4
  • 1.35e4
  • 1.71e4
54.87
  • 54.87
  • 42.70
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.41e4
  • 1.41e4
  • 1.43e4
  • 1.47e4
  • 1.73e4
  • 1.84e4
52.62
  • 52.62
  • 52.19
  • 50.79
  • 41.96
  • 38.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
  • 1.67e4
49.94
  • 49.94
  • 44.14
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.63e4
  • 1.63e4
45.48
  • 45.48
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.37
  • 39.37
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.26e4
  • 2.26e4
24.33
  • 24.33
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.44e4
  • 2.44e4
18.34
  • 18.34
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLBC053123, BX537123
EnsemblENSDARG00000025187 (six6a)
Uniprot/SPTREMBLQ7T3G8, Q7T3G8_DANRE
ZFINZDB-GENE-040426-1282 (six6a)

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