D. rerio Gene: cpsf3l - ENSDARG00000025212 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000025212
Namecpsf3l
Descriptioncleavage and polyadenylation specific factor 3-like [Source:ZFIN;Acc:ZDB-GENE-050522-13]
OrganismDanio rerio (zebrafish)
Synonym(s)ints11, zgc:110671
Orthologs(s)24 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.08e3
  • 2.08e3
93.02
  • 93.02
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.22e3
  • 3.22e3
89.23
  • 89.23
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
4.36e3
  • 4.36e3
  • 4.50e3
  • 4.88e3
  • 5.49e3
  • 5.75e3
  • 5.77e3
  • 5.82e3
  • 6.48e3
  • 7.73e3
  • 1.01e4
85.41
  • 85.41
  • 84.92
  • 83.67
  • 81.62
  • 80.74
  • 80.68
  • 80.50
  • 78.32
  • 74.11
  • 66.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.56e3
  • 4.56e3
84.72
  • 84.72
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
4.93e3
  • 4.93e3
  • 5.58e3
  • 6.09e3
  • 6.44e3
  • 6.97e3
  • 6.99e3
  • 7.10e3
  • 7.19e3
  • 7.29e3
  • 7.89e3
  • 8.00e3
  • 8.32e3
  • 9.11e3
  • 9.29e3
83.49
  • 83.49
  • 81.32
  • 79.61
  • 78.45
  • 76.65
  • 76.58
  • 76.23
  • 75.91
  • 75.59
  • 73.58
  • 73.20
  • 72.16
  • 69.48
  • 68.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.99e3
  • 4.99e3
83.30
  • 83.30
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
5.08e3
  • 5.08e3
  • 7.53e3
  • 8.14e3
  • 8.19e3
  • 8.49e3
  • 1.00e4
83.00
  • 83.00
  • 74.79
  • 72.76
  • 72.59
  • 71.57
  • 66.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.54e3
  • 5.54e3
81.44
  • 81.44
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
5.57e3
  • 5.57e3
  • 7.65e3
  • 7.87e3
  • 1.18e4
  • 1.20e4
81.35
  • 81.35
  • 74.39
  • 73.65
  • 60.46
  • 59.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.59e3
  • 5.59e3
81.27
  • 81.27
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.72e3
  • 5.72e3
80.85
  • 80.85
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.96e3
  • 5.96e3
80.06
  • 80.06
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.17e3
  • 6.17e3
  • 9.62e3
79.35
  • 79.35
  • 67.79
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
6.24e3
  • 6.24e3
  • 6.43e3
  • 7.11e3
  • 7.74e3
79.11
  • 79.11
  • 78.46
  • 76.18
  • 74.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.32e3
  • 6.32e3
78.84
  • 78.84
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.65e3
  • 6.65e3
  • 7.64e3
77.73
  • 77.73
  • 74.42
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.70e3
  • 6.70e3
  • 8.83e3
77.57
  • 77.57
  • 70.42
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.98e3
  • 6.98e3
76.62
  • 76.62
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.40e3
  • 7.40e3
75.22
  • 75.22
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.54e3
  • 7.54e3
74.77
  • 74.77
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.59e3
  • 7.59e3
74.59
  • 74.59
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.64e3
  • 7.64e3
74.44
  • 74.44
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.71e3
  • 7.71e3
74.19
  • 74.19
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
7.81e3
  • 7.81e3
  • 8.48e3
73.87
  • 73.87
  • 71.59
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.93e3
  • 7.93e3
73.43
  • 73.43
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.98e3
  • 7.98e3
73.30
  • 73.30
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.36e3
  • 8.36e3
72.02
  • 72.02
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.54e3
  • 8.54e3
71.41
  • 71.41
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
8.56e3
  • 8.56e3
  • 8.70e3
  • 9.72e3
71.34
  • 71.34
  • 70.88
  • 67.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.63e3
  • 8.63e3
71.10
  • 71.10
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.16e3
  • 9.16e3
69.34
  • 69.34
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.21
  • 39.21
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000025212.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Eukaryota1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000025212.

Cross-references

EnsemblENSDARG00000025212 (cpsf3l)
ZFINZDB-GENE-050522-13 (cpsf3l)
EMBLCABZ01054885, CR846089
Uniprot/SPTREMBLE7EXW1, E7EXW1_DANRE, E9QFP8, E9QFP8_DANRE, E9QIT1, E9QIT1_DANRE, F1QEY5, F1QEY5_DANRE

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