D. rerio Gene: dpf3 - ENSDARG00000025309 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000025309
Namedpf3
DescriptionD4, zinc and double PHD fingers, family 3 [Source:ZFIN;Acc:ZDB-GENE-041014-190]
OrganismDanio rerio (zebrafish)
Synonym(s)fj43h12, q5rij2, si:ch211-268e23.1, wu:fj43h12

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
2.33e3
  • 2.33e3
  • 9.84e3
  • 1.06e4
  • 1.18e4
  • 1.22e4
92.20
  • 92.20
  • 67.04
  • 64.50
  • 60.35
  • 59.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
2.36e3
  • 2.36e3
92.09
  • 92.09
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000104life cycle
7.03e3
  • 7.03e3
  • 1.47e4
76.46
  • 76.46
  • 50.90
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
7.52e3
  • 7.52e3
  • 1.34e4
  • 1.36e4
74.84
  • 74.84
  • 54.99
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.36e3
  • 8.36e3
72.02
  • 72.02
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
8.95e3
  • 8.95e3
  • 1.18e4
70.03
  • 70.03
  • 60.54
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.09
  • 62.09
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
  • 1.53e4
60.33
  • 60.33
  • 48.87
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000031Pharyngula:Prim-25
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.62
  • 57.62
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.86
  • 56.86
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.32e4
  • 1.32e4
  • 1.66e4
55.96
  • 55.96
  • 44.56
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
1.34e4
  • 1.34e4
  • 1.36e4
54.99
  • 54.99
  • 54.52
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.36e4
  • 1.36e4
54.36
  • 54.36
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.78
  • 52.78
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
1.41e4
  • 1.41e4
52.75
  • 52.75
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.83
  • 51.83
AEIR
  • AEIR
CL:0000188cell of skeletal muscle
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002081cardiac atrium
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.69
  • 46.69
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.21
  • 45.21
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.79
  • 44.79
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.15
  • 44.15
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
41.93
  • 41.93
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.58
  • 40.58
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.62
  • 39.62
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
37.97
  • 37.97
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.13e4
  • 2.13e4
28.80
  • 28.80
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX255881, EU245032
EnsemblENSDARG00000025309 (dpf3)
Uniprot/SPTREMBLG8JL12, G8JL12_DANRE
Uniprot/SWISSPROTA9LMC0, DPF3_DANRE
ZFINZDB-GENE-041014-190 (dpf3)

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