D. rerio Gene: pfdn2 - ENSDARG00000025391 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000025391
Namepfdn2
Descriptionprefoldin subunit 2 [Source:ZFIN;Acc:ZDB-GENE-060519-27]
OrganismDanio rerio (zebrafish)
Synonym(s)im:6895552, wu:fb79a01, zgc:136473

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
935
  • 935
  • 1.41e3
  • 1.76e3
  • 2.67e3
  • 2.68e3
  • 2.89e3
  • 3.04e3
  • 3.13e3
  • 3.47e3
  • 8.52e3
96.87
  • 96.87
  • 95.29
  • 94.11
  • 91.05
  • 91.04
  • 90.32
  • 89.83
  • 89.53
  • 88.39
  • 71.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.32e3
  • 1.32e3
  • 1.63e3
  • 2.46e3
  • 2.54e3
  • 5.81e3
  • 6.39e3
95.57
  • 95.57
  • 94.55
  • 91.75
  • 91.49
  • 80.56
  • 78.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.36e3
  • 1.36e3
  • 1.50e4
95.45
  • 95.45
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.52e3
  • 1.52e3
  • 1.76e3
  • 1.91e3
  • 2.03e3
  • 2.20e3
  • 2.21e3
  • 2.45e3
  • 3.00e3
  • 3.32e3
  • 3.38e3
  • 4.01e3
  • 5.77e3
  • 5.90e3
  • 6.79e3
  • 1.39e4
  • 1.45e4
  • 1.50e4
94.91
  • 94.91
  • 94.12
  • 93.59
  • 93.21
  • 92.63
  • 92.62
  • 91.79
  • 89.97
  • 88.90
  • 88.69
  • 86.57
  • 80.69
  • 80.24
  • 77.26
  • 53.44
  • 51.56
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.54e3
  • 1.54e3
94.84
  • 94.84
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.56e3
  • 1.56e3
94.79
  • 94.79
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
1.94e3
  • 1.94e3
  • 2.27e3
  • 7.69e3
  • 8.38e3
  • 8.40e3
93.52
  • 93.52
  • 92.41
  • 74.25
  • 71.94
  • 71.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.97e3
  • 1.97e3
93.39
  • 93.39
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.10e3
  • 2.10e3
92.97
  • 92.97
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.34e3
  • 2.34e3
92.17
  • 92.17
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.41e3
  • 2.41e3
91.95
  • 91.95
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.48e3
  • 2.48e3
91.70
  • 91.70
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.60e3
  • 2.60e3
  • 4.90e3
91.31
  • 91.31
  • 83.60
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.64e3
  • 2.64e3
91.17
  • 91.17
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.69e3
  • 2.69e3
91.00
  • 91.00
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.74e3
  • 2.74e3
90.82
  • 90.82
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.77e3
  • 2.77e3
90.72
  • 90.72
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
90.69
  • 90.69
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.98e3
  • 2.98e3
90.02
  • 90.02
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.18e3
  • 3.18e3
89.35
  • 89.35
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.24e3
  • 3.24e3
89.15
  • 89.15
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
89.07
  • 89.07
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.62e3
  • 3.62e3
  • 5.17e3
87.88
  • 87.88
  • 82.70
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.81e3
  • 3.81e3
87.24
  • 87.24
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.85e3
  • 3.85e3
87.10
  • 87.10
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.05e3
  • 4.05e3
  • 4.44e3
  • 6.62e3
86.44
  • 86.44
  • 85.12
  • 77.82
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.08e3
  • 4.08e3
  • 4.76e3
86.33
  • 86.33
  • 84.06
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.27e3
  • 4.27e3
85.71
  • 85.71
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.40e3
  • 5.40e3
81.91
  • 81.91
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.02e3
  • 6.02e3
79.85
  • 79.85
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.72e3
  • 6.72e3
  • 8.54e3
  • 9.55e3
  • 1.12e4
77.52
  • 77.52
  • 71.39
  • 68.04
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.59e3
  • 7.59e3
  • 8.51e3
74.59
  • 74.59
  • 71.49
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.36e3
  • 8.36e3
72.02
  • 72.02
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC116551, BX324230
EnsemblENSDARG00000025391 (pfdn2)
Uniprot/SPTREMBLQ1JPY6, Q1JPY6_DANRE
ZFINZDB-GENE-060519-27 (pfdn2)

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