D. rerio Gene: srsf3a - ENSDARG00000025397 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000025397
Namesrsf3a
Descriptionserine/arginine-rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]
OrganismDanio rerio (zebrafish)
Synonym(s)sfrs3, sfrs3a, sfrs3agn, si:zc263a23.9, wu:fb44e08, zgc:86626
Orthologs(s)22 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
247
  • 247
  • 255
99.18
  • 99.18
  • 99.15
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
553
  • 553
  • 2.56e3
98.15
  • 98.15
  • 91.44
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
566
  • 566
  • 598
  • 1.20e3
  • 1.31e3
  • 1.35e3
98.11
  • 98.11
  • 98.00
  • 95.98
  • 95.62
  • 95.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
689
  • 689
97.69
  • 97.69
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
694
  • 694
  • 1.50e4
97.68
  • 97.68
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
696
  • 696
97.67
  • 97.67
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
763
  • 763
  • 1.46e3
97.45
  • 97.45
  • 95.13
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
983
  • 983
  • 1.69e3
96.71
  • 96.71
  • 94.35
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.07e3
  • 1.07e3
96.42
  • 96.42
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.14e3
  • 1.14e3
96.20
  • 96.20
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.16e3
  • 1.16e3
96.11
  • 96.11
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.17e3
  • 1.17e3
  • 1.33e4
96.08
  • 96.08
  • 55.51
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.25e3
  • 1.25e3
95.82
  • 95.82
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.32e3
  • 1.32e3
  • 1.41e3
95.59
  • 95.59
  • 95.29
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.33e3
  • 1.33e3
95.54
  • 95.54
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.50e3
  • 1.50e3
95.00
  • 95.00
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.77e3
  • 1.77e3
94.06
  • 94.06
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.79e3
  • 1.79e3
94.02
  • 94.02
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.93e3
  • 1.93e3
93.53
  • 93.53
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.95e3
  • 1.95e3
93.49
  • 93.49
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.10e3
  • 2.10e3
92.98
  • 92.98
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.29e3
  • 2.29e3
92.32
  • 92.32
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.69e3
  • 2.69e3
91.00
  • 91.00
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.53e3
  • 3.53e3
88.19
  • 88.19
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.94e3
  • 4.94e3
83.47
  • 83.47
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • ZFS:0000049segmentation
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
6.79e3
  • 6.79e3
  • 1.30e4
  • 1.40e4
  • 1.45e4
  • 1.46e4
  • 1.47e4
77.26
  • 77.26
  • 56.38
  • 53.08
  • 51.56
  • 51.01
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
  • 1.50e4
57.80
  • 57.80
  • 49.94
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000025397.

Cross-references

EnsemblENSDARG00000025397 (srsf3a)
ZFINZDB-GENE-030616-631 (srsf3a)
EMBLAL732567, BC071322
Uniprot/SPTREMBLQ801U3, Q801U3_DANRE, Q801U4, Q801U4_DANRE

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