Gene: socs3a - ENSDARG00000025428 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000025428
Name	socs3a
Description	suppressor of cytokine signaling 3a [Source:ZFIN;Acc:ZDB-GENE-030131-7349]
Organism	Danio rerio (zebrafish)
Synonym(s)	fj09e12, socs3, wu:fj09e12, zgc:56537
Orthologs(s)	15 orthologs
Paralog(s)	2 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	156 156	99.48 99.48	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	923 923	96.91 96.91	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	1.63e3 1.63e3 4.73e3	94.55 94.55 84.17	AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.72e3 1.72e3	94.26 94.26	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.95e3 1.95e3	93.47 93.47	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	2.98e3 2.98e3 8.13e3	90.01 90.01 72.77	AEIR AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	3.17e3 3.17e3	89.37 89.37	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	4.30e3 4.30e3	85.62 85.62	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	4.77e3 4.77e3	84.04 84.04	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	5.05e3 5.05e3	83.10 83.10	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	5.50e3 5.50e3	81.60 81.60	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	6.97e3 6.97e3	76.66 76.66	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	7.64e3 7.64e3	74.42 74.42	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	7.80e3 7.80e3	73.89 73.89	AEIR AEIR
UBERON:0000922	embryo	[+] 4 stages ZFS:0000037Larval:Day 5 ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage	7.87e3 7.87e3 1.71e4 2.29e4 2.43e4	73.65 73.65 42.58 23.45 18.52	AEIR AEIR AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	8.45e3 8.45e3	71.71 71.71	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	8.93e3 8.93e3 1.91e4	70.11 70.11 36.21	AEIR AEIR AEIR
UBERON:0001997	olfactory epithelium	[+] 1 stage UBERON:0000104life cycle	1.10e4 1.10e4	63.21 63.21	AEIR AEIR
UBERON:0000019	camera-type eye	[+] 1 stage UBERON:0000066fully formed stage	1.30e4 1.30e4	56.53 56.53	AEIR AEIR
UBERON:0008897	fin	[+] 2 stages UBERON:0000104life cycle UBERON:0000066fully formed stage	1.46e4 1.46e4 1.50e4	51.22 51.22 49.91	AEIR AEIR AEIR
UBERON:0000992	female gonad	[+] 2 stages UBERON:0000104life cycle UBERON:0000066fully formed stage	1.50e4 1.50e4 2.17e4	49.89 49.89 27.34	AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.52e4 1.52e4	49.01 49.01	AEIR AEIR
UBERON:0004734	gastrula	[+] 1 stage ZFS:0000022Gastrula:Bud	1.89e4 1.89e4	36.79 36.79	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	15 species Homo sapiens (human) Mus musculus (mouse) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	15 genes ENSG00000184557 SOCS3 ENSMUSG00000053113 Socs3 ENSGGOG00000016304 SOCS3 ENSMMUG00000017522 SOCS3 ENSRNOG00000002946 Socs3 ENSBTAG00000008441 SOCS3 ENSECAG00000001249 SOCS3 ENSCAFG00000005306 SOCS3 ENSFCAG00000027677 SOCS3 ENSCPOG00000004247 SOCS3 ENSMODG00000001881 SOCS3 ENSOANG00000010894 SOCS3 ENSGALG00000027786 SOCS3 ENSACAG00000016701 SOCS3 ENSXETG00000024632 socs3	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000025428.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	1 gene ENSDARG00000104400 socs3a	Compare expression	[+]
Neopterygii	2 genes ENSDARG00000026611 socs3b ENSDARG00000104400 socs3a	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000025428.

Cross-references

Ensembl	ENSDARG00000025428 (socs3a)
ZFIN	ZDB-GENE-030131-7349 (socs3a)
EMBL	AL953847, BC049326, FO704867
Uniprot/SPTREMBL	Q7ZUC6, Q7ZUC6_DANRE