D. rerio Gene: msrb1a - ENSDARG00000025436 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000025436
Namemsrb1a
Descriptionmethionine sulfoxide reductase B1a [Source:ZFIN;Acc:ZDB-GENE-030411-3]
OrganismDanio rerio (zebrafish)
Synonym(s)cb687, msrb, msrb1-a, selx, selx-a, sepr, sepx1, sepx1a, sepx1agn, wu:fa03e09

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.26e3
  • 1.26e3
95.80
  • 95.80
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.55e3
  • 1.55e3
94.80
  • 94.80
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
1.79e3
  • 1.79e3
  • 3.77e3
  • 4.34e3
  • 4.52e3
  • 5.62e3
  • 8.08e3
94.00
  • 94.00
  • 87.36
  • 85.47
  • 84.85
  • 81.18
  • 72.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
2.04e3
  • 2.04e3
  • 4.30e3
  • 6.47e3
  • 8.03e3
  • 8.29e3
93.18
  • 93.18
  • 85.61
  • 78.33
  • 73.13
  • 72.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.56e3
  • 2.56e3
91.42
  • 91.42
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.75e3
  • 2.75e3
90.81
  • 90.81
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.81e3
  • 2.81e3
90.60
  • 90.60
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.93e3
  • 2.93e3
  • 8.15e3
90.20
  • 90.20
  • 72.72
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.38e3
  • 3.38e3
88.70
  • 88.70
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.42e3
  • 3.42e3
88.55
  • 88.55
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.53e3
  • 3.53e3
88.20
  • 88.20
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
3.56e3
  • 3.56e3
  • 5.29e3
  • 5.36e3
  • 5.41e3
  • 5.59e3
  • 7.30e3
  • 7.37e3
  • 7.37e3
  • 7.39e3
  • 9.27e3
  • 1.02e4
  • 1.10e4
  • 1.21e4
  • 1.23e4
  • 1.44e4
  • 1.45e4
  • 1.47e4
88.10
  • 88.10
  • 82.30
  • 82.05
  • 81.89
  • 81.29
  • 75.55
  • 75.34
  • 75.34
  • 75.26
  • 68.95
  • 65.90
  • 63.14
  • 59.55
  • 58.93
  • 51.94
  • 51.42
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
3.76e3
  • 3.76e3
87.40
  • 87.40
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.11e3
  • 4.11e3
86.23
  • 86.23
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.26e3
  • 4.26e3
85.74
  • 85.74
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.33e3
  • 4.33e3
85.49
  • 85.49
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
4.77e3
  • 4.77e3
  • 6.79e3
  • 7.40e3
  • 8.63e3
  • 9.44e3
  • 1.16e4
  • 1.18e4
  • 1.21e4
  • 1.35e4
  • 1.58e4
84.02
  • 84.02
  • 77.26
  • 75.21
  • 71.10
  • 68.41
  • 61.17
  • 60.43
  • 59.32
  • 54.82
  • 47.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.45e3
  • 5.45e3
81.76
  • 81.76
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.51e3
  • 5.51e3
81.54
  • 81.54
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
6.25e3
  • 6.25e3
  • 1.10e4
  • 1.15e4
79.07
  • 79.07
  • 63.19
  • 61.64
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.45e3
  • 6.45e3
  • 1.17e4
78.41
  • 78.41
  • 60.79
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.87e3
  • 6.87e3
77.01
  • 77.01
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.32e3
  • 7.32e3
75.51
  • 75.51
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.38e3
  • 7.38e3
75.28
  • 75.28
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.75e3
  • 7.75e3
74.05
  • 74.05
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
8.04e3
  • 8.04e3
  • 9.25e3
  • 9.67e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
73.07
  • 73.07
  • 69.03
  • 67.63
  • 67.48
  • 66.65
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.82e3
  • 9.82e3
67.11
  • 67.11
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.13e4
  • 1.13e4
62.01
  • 62.01
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.16e4
  • 1.16e4
  • 1.27e4
  • 1.27e4
  • 1.31e4
61.06
  • 61.06
  • 57.47
  • 57.47
  • 56.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.22e4
  • 1.22e4
59.16
  • 59.16
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
  • 1.51e4
56.58
  • 56.58
  • 49.53
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.36e4
  • 1.36e4
  • 1.45e4
54.38
  • 54.38
  • 51.55
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.44e4
  • 1.44e4
  • 1.54e4
  • 1.65e4
  • 1.68e4
51.82
  • 51.82
  • 48.59
  • 44.67
  • 43.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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