D. rerio Gene: spon2a - ENSDARG00000025465 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000025465
Namespon2a
Descriptionspondin 2a, extracellular matrix protein [Source:ZFIN;Acc:ZDB-GENE-990415-160]
OrganismDanio rerio (zebrafish)
Synonym(s)etid309957.14, mindin1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003058hypochord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
8.54e3
  • 8.54e3
  • 1.33e4
  • 1.34e4
  • 1.49e4
  • 1.49e4
71.42
  • 71.42
  • 55.55
  • 54.99
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.34e3
  • 9.34e3
  • 1.29e4
  • 1.37e4
  • 1.49e4
  • 1.49e4
68.74
  • 68.74
  • 56.65
  • 54.15
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
1.24e4
  • 1.24e4
  • 1.36e4
58.32
  • 58.32
  • 54.52
AEIR
  • AEIR
  • AEIR
UBERON:0003068axial mesoderm
  • ZFS:0000023Segmentation:1-4 somites
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
1.31e4
  • 1.31e4
  • 1.35e4
  • 1.39e4
  • 1.64e4
  • 1.72e4
  • 1.75e4
  • 1.78e4
  • 1.78e4
  • 1.81e4
  • 1.95e4
56.01
  • 56.01
  • 54.63
  • 53.37
  • 45.15
  • 42.27
  • 41.29
  • 40.54
  • 40.27
  • 39.27
  • 34.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
1.35e4
  • 1.35e4
  • 1.39e4
  • 1.41e4
  • 1.68e4
  • 1.69e4
  • 1.75e4
54.93
  • 54.93
  • 53.40
  • 52.87
  • 43.69
  • 43.58
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006599presumptive hypochord
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.57e4
  • 1.57e4
47.44
  • 47.44
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
1.64e4
  • 1.64e4
  • 1.66e4
  • 1.72e4
  • 1.77e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
  • 1.81e4
  • 1.83e4
  • 1.83e4
44.95
  • 44.95
  • 44.45
  • 42.44
  • 40.62
  • 40.56
  • 40.53
  • 40.38
  • 40.38
  • 40.18
  • 39.85
  • 39.42
  • 38.72
  • 38.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.72e4
  • 1.72e4
42.39
  • 42.39
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.73e4
  • 1.73e4
  • 1.75e4
  • 1.76e4
42.21
  • 42.21
  • 41.29
  • 41.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.80
  • 36.80
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.14
  • 36.14
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.21e4
  • 2.21e4
26.05
  • 26.05
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.53
  • 25.53
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAB006084, BX324205
EnsemblENSDARG00000025465 (spon2a)
Uniprot/SPTREMBLO42111, O42111_DANRE
ZFINZDB-GENE-990415-160 (spon2a)

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