D. rerio Gene: si:ch73-343l4.6 - ENSDARG00000025547 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000025547
Namesi:ch73-343l4.6
Descriptionsi:ch73-343l4.6 [Source:ZFIN;Acc:ZDB-GENE-090313-158]
OrganismDanio rerio (zebrafish)
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.28
  • 38.28
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
2.11e4
  • 2.11e4
  • 2.77e4
  • 2.87e4
29.20
  • 29.20
  • 7.41
  • 3.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
2.21e4
  • 2.21e4
26.11
  • 26.11
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.47e4
  • 2.47e4
17.33
  • 17.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi2 genesCompare expression
Clupeocephala4 genesCompare expression
Neopterygii6 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000025547.

Cross-references

EnsemblENSDARG00000025547 (si:ch73-343l4.6)
ZFINZDB-GENE-090313-158 (si:ch73-343l4.6)
EMBLCU571077
Uniprot/SPTREMBLB8JM29, B8JM29_DANRE

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