D. rerio Gene: grin1b - ENSDARG00000025728 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000025728
Namegrin1b
Descriptionglutamate receptor, ionotropic, N-methyl D-aspartate 1b [Source:ZFIN;Acc:ZDB-GENE-051202-2]
OrganismDanio rerio (zebrafish)
Synonym(s)nmdar1.2, si:rp71-1o1.1
Orthologs(s)21 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
117
  • 117
99.61
  • 99.61
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
697
  • 697
97.67
  • 97.67
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
871
  • 871
  • 5.04e3
  • 1.81e4
  • 1.95e4
  • 2.23e4
97.09
  • 97.09
  • 83.12
  • 39.33
  • 34.74
  • 25.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
971
  • 971
  • 2.34e3
96.75
  • 96.75
  • 92.16
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.54e3
  • 2.54e3
  • 1.52e4
91.51
  • 91.51
  • 49.05
AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.29e4
  • 1.29e4
  • 1.49e4
56.65
  • 56.65
  • 49.97
AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.40e4
  • 1.40e4
53.18
  • 53.18
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
47.97
  • 47.97
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
  • 1.81e4
41.63
  • 41.63
  • 39.28
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi14 species14 genesCompare expression
Bilateria21 species21 genesCompare expression

Orthology information comes from OMA : ENSDARG00000025728.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression
Eumetazoa4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000025728.

Cross-references

EnsemblENSDARG00000025728 (grin1b)
ZFINZDB-GENE-051202-2 (grin1b)
EMBLAL831768, BX276128
Uniprot/SPTREMBLQ6ZM67, Q6ZM67_DANRE

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