Gene: dmtf1 - ENSDARG00000025824 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000025824
Name	dmtf1
Description	cyclin D binding myb-like transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-040718-413]
Organism	Danio rerio (zebrafish)
Synonym(s)	q5rge9, zgc:92448
Orthologs(s)	20 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000307	blastula	[+] 2 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome	6.16e3 6.16e3 6.32e3	79.38 79.38 78.84	AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	6.45e3 6.45e3	78.41 78.41	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	6.67e3 6.67e3	77.66 77.66	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	6.76e3 6.76e3 7.30e3	77.35 77.35 75.57	AEIR AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	6.80e3 6.80e3	77.25 77.25	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	7.34e3 7.34e3	75.44 75.44	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	8.04e3 8.04e3	73.08 73.08	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages UBERON:0004707pharyngula stage ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage ZFS:0000037Larval:Day 5 ZFS:0000029Pharyngula:Prim-5	8.30e3 8.30e3 8.85e3 8.85e3 9.97e3 1.01e4	72.21 72.21 70.38 70.36 66.62 66.15	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	8.35e3 8.35e3 1.04e4	72.04 72.04 65.09	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	8.44e3 8.44e3	71.76 71.76	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	8.59e3 8.59e3	71.23 71.23	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	8.98e3 8.98e3 9.70e3	69.94 69.94 67.52	AEIR AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	9.04e3 9.04e3 1.23e4	69.73 69.73 58.81	AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	9.09e3 9.09e3	69.55 69.55	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	9.31e3 9.31e3	68.82 68.82	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	9.63e3 9.63e3	67.76 67.76	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	1.00e4 1.00e4	66.39 66.39	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.03e4 1.03e4	65.45 65.45	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.03e4 1.03e4	65.43 65.43	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.12e4 1.12e4	62.37 62.37	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.15e4 1.15e4	61.52 61.52	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.16e4 1.16e4	61.00 61.00	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.25e4 1.25e4	58.26 58.26	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.26e4 1.26e4	57.87 57.87	AEIR AEIR
UBERON:0000019	camera-type eye	[+] 1 stage UBERON:0000066fully formed stage	1.50e4 1.50e4	49.94 49.94	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	19 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	20 genes ENSG00000135164 DMTF1 ENSMUSG00000042508 Dmtf1 ENSPTRG00000019364 DMTF1 ENSGGOG00000002781 DMTF1 ENSMMUG00000010781 DMTF1 ENSRNOG00000005908 Dmtf1 ENSBTAG00000020878 DMTF1 ENSSSCG00000015393 DMTF1 ENSECAG00000020746 DMTF1 ENSOCUG00000009179 DMTF1 ENSCAFG00000001819 DMTF1 ENSFCAG00000013756 DMTF1 ENSCPOG00000002780 ENSCPOG00000023246 ENSEEUG00000012844 DMTF1 ENSMODG00000016953 DMTF1 ENSOANG00000015391 DMTF1 ENSGALG00000006628 DMTF1 ENSACAG00000001448 DMTF1 ENSXETG00000005412 dmtf1	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000025824.

Cross-references

Ensembl	ENSDARG00000025824 (dmtf1)
ZFIN	ZDB-GENE-040718-413 (dmtf1)
EMBL	BC076552, BC165780, BX901962
Uniprot/SPTREMBL	B2GT69, B2GT69_DANRE, H0WF14, H0WF14_DANRE, H2L2P5, H2L2P5_DANRE
Uniprot/SWISSPROT	DMTF1_DANRE, Q6DG03